3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
C(2MU)GUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XHW_061 not in the Motif Atlas
Homologous match to HL_7RQB_062
Geometric discrepancy: 0.0726
The information below is about HL_7RQB_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XHW|1|1A|C|2551
6XHW|1|1A|2MU|2552
6XHW|1|1A|G|2553
6XHW|1|1A|U|2554
6XHW|1|1A|U|2555
6XHW|1|1A|C|2556
6XHW|1|1A|G|2557

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1a
Small subunit ribosomal RNA; SSU rRNA
Chain 1w
Transfer RNA; tRNA

Coloring options:


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