HL_6XHW_223
3D structure
- PDB id
- 6XHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 6XHW|1|2y|C|56, 6XHW|1|2y|G|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XHW_223 not in the Motif Atlas
- Homologous match to HL_4WT8_217
- Geometric discrepancy: 0.3659
- The information below is about HL_4WT8_217
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6XHW|1|2y|G|53
6XHW|1|2y|5MU|54
6XHW|1|2y|PSU|55
6XHW|1|2y|C|56
6XHW|1|2y|G|57
6XHW|1|2y|A|58
6XHW|1|2y|U|59
6XHW|1|2y|U|60
6XHW|1|2y|C|61
Current chains
- Chain 2y
- E-site tRNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
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