HL_6XHX_076

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6XHX|1|1a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_076 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0993

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XHX|1|1a|G|259
6XHX|1|1a|G|260
6XHX|1|1a|U|261
6XHX|1|1a|A|262
6XHX|1|1a|A|263
6XHX|1|1a|U|264
6XHX|1|1a|G|265
6XHX|1|1a|G|266
6XHX|1|1a|C|267

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20