HL_6XHX_095

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6XHX|1|1a|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHX_095 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1057

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6XHX|1|1a|G|1089
6XHX|1|1a|U|1090
6XHX|1|1a|U|1091
6XHX|1|1a|A|1092
6XHX|1|1a|A|1093
6XHX|1|1a|G|1094
6XHX|1|1a|U|1095
6XHX|1|1a|C|1096

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1g

30S ribosomal protein S7