HL_6XHY_109

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

6XHY|1|1y|G|18, 6XHY|1|1y|G|19, 6XHY|1|1y|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XHY_109 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.2574

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHY|1|1y|C|13
6XHY|1|1y|A|14
6XHY|1|1y|G|15
6XHY|1|1y|G|18
6XHY|1|1y|G|19
6XHY|1|1y|U|20
6XHY|1|1y|A|21
6XHY|1|1y|G|22

Current chains

Chain 1y

E-site tRNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA