HL_6XHY_228
3D structure
- PDB id
- 6XHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XHY_228 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.1066
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
6XHY|1|1w|A|31
6XHY|1|1w|PSU|32
6XHY|1|1w|U|33
6XHY|1|1w|G|34
6XHY|1|1w|A|35
6XHY|1|1w|A|36
6XHY|1|1w|MIA|37
6XHY|1|1w|A|38
6XHY|1|1w|PSU|39
Current chains
- Chain 1w
- A-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1l
- 30S ribosomal protein S12
- Chain 1m
- 30S ribosomal protein S13
- Chain 1v
- mRNA
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