HL_6XII_037

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGGC

Length

4 nucleotides

Bulged bases

6XII|1|D|G|1517

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XII_037 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1667

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6XII|1|D|G|1515
6XII|1|D|G|1516
6XII|1|D|G|1517
6XII|1|D|C|1520

Current chains

Chain D

16S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA