6XII Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XII_001 | No text annotation | ||
| HL_6XII_002 | tRNA anticodon loop | ||
| HL_6XII_003 | T-loop with 2 stacked bulged bases | ||
| HL_6XII_004 | No text annotation | ||
| HL_6XII_005 | No text annotation | ||
| HL_6XII_006 | T-loop with 2 stacked bulged bases | ||
| HL_6XII_007 | No text annotation | ||
| HL_6XII_008 | No text annotation | ||
| HL_6XII_009 | GNRA | ||
| HL_6XII_010 | GNRA | ||
| HL_6XII_109 | No text annotation | ||
| HL_6XII_011 | No text annotation | ||
| HL_6XII_012 | GNRA related | ||
| HL_6XII_013 | GNRA | ||
| HL_6XII_014 | No text annotation | ||
| HL_6XII_015 | UNCG | ||
| HL_6XII_016 | GNRA | ||
| HL_6XII_017 | UNCG | ||
| HL_6XII_018 | GNRA wlth extra near cWW | ||
| HL_6XII_019 | No text annotation | ||
| HL_6XII_020 | GNRA-like with tWH | ||
| HL_6XII_021 | No text annotation | ||
| HL_6XII_022 | GNRA | ||
| HL_6XII_023 | No text annotation | ||
| HL_6XII_024 | No text annotation | ||
| HL_6XII_025 | GNRA | ||
| HL_6XII_026 | GNRA | ||
| HL_6XII_027 | No text annotation | ||
| HL_6XII_028 | GNRA | ||
| HL_6XII_029 | GNRA | ||
| HL_6XII_030 | T-loop related | ||
| HL_6XII_110 | No text annotation | ||
| HL_6XII_031 | No text annotation | ||
| HL_6XII_032 | GNRA | ||
| HL_6XII_033 | GNRA | ||
| HL_6XII_034 | T-loop with 3 stacked bulged bases | ||
| HL_6XII_035 | No text annotation | ||
| HL_6XII_036 | UNCG | ||
| HL_6XII_037 | GNRA | ||
| HL_6XII_038 | No text annotation | ||
| HL_6XII_039 | No text annotation | ||
| HL_6XII_040 | No text annotation | ||
| HL_6XII_041 | UNCG | ||
| HL_6XII_042 | No text annotation | ||
| HL_6XII_043 | No text annotation | ||
| HL_6XII_044 | No text annotation | ||
| HL_6XII_045 | No text annotation | ||
| HL_6XII_046 | T-loop with 2 stacked bulged bases | ||
| HL_6XII_047 | No text annotation | ||
| HL_6XII_048 | T-loop with unstacked turn | ||
| HL_6XII_049 | No text annotation | ||
| HL_6XII_050 | Pseudoknot geometry | ||
| HL_6XII_051 | GNRA | ||
| HL_6XII_052 | GNRA | ||
| HL_6XII_053 | No text annotation | ||
| HL_6XII_054 | T-loop with 2 stacked bulged bases | ||
| HL_6XII_055 | No text annotation | ||
| HL_6XII_056 | GNRA | ||
| HL_6XII_057 | No text annotation | ||
| HL_6XII_058 | GNRA wlth tandem sheared | ||
| HL_6XII_059 | No text annotation | ||
| HL_6XII_060 | No text annotation | ||
| HL_6XII_061 | No text annotation | ||
| HL_6XII_111 | No text annotation | ||
| HL_6XII_062 | No text annotation | ||
| HL_6XII_063 | No text annotation | ||
| HL_6XII_064 | No text annotation | ||
| HL_6XII_065 | No text annotation | ||
| HL_6XII_066 | GNRA wlth tandem sheared | ||
| HL_6XII_067 | No text annotation | ||
| HL_6XII_068 | GNRA | ||
| HL_6XII_069 | T-loop with 2 stacked bulged bases | ||
| HL_6XII_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6XII_071 | GNRA | ||
| HL_6XII_072 | No text annotation | ||
| HL_6XII_073 | Mini UNCG with extended bulge | ||
| HL_6XII_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6XII_075 | UNCG | ||
| HL_6XII_076 | Mini UNCG | ||
| HL_6XII_077 | No text annotation | ||
| HL_6XII_078 | GNRA | ||
| HL_6XII_079 | UNCG | ||
| HL_6XII_112 | No text annotation | ||
| HL_6XII_080 | No text annotation | ||
| HL_6XII_081 | No text annotation | ||
| HL_6XII_082 | No text annotation | ||
| HL_6XII_083 | GNRA related | ||
| HL_6XII_084 | GNRA variation | ||
| HL_6XII_085 | No text annotation | ||
| HL_6XII_086 | No text annotation | ||
| HL_6XII_087 | No text annotation | ||
| HL_6XII_088 | No text annotation | ||
| HL_6XII_089 | No text annotation | ||
| HL_6XII_090 | No text annotation | ||
| HL_6XII_091 | No text annotation | ||
| HL_6XII_092 | No text annotation | ||
| HL_6XII_114 | No text annotation | ||
| HL_6XII_093 | Pseudoknot geometry | ||
| HL_6XII_094 | GNRA | ||
| HL_6XII_095 | GNRA | ||
| HL_6XII_096 | No text annotation | ||
| HL_6XII_097 | No text annotation | ||
| HL_6XII_098 | GNRA variation | ||
| HL_6XII_099 | No text annotation | ||
| HL_6XII_100 | GNRA | ||
| HL_6XII_101 | GNRA | ||
| HL_6XII_102 | Ribsomal LSU H95 | ||
| HL_6XII_103 | No text annotation | ||
| HL_6XII_104 | No text annotation | ||
| HL_6XII_115 | UNCG variation | ||
| HL_6XII_105 | No text annotation | ||
| HL_6XII_106 | GNRA | ||
| HL_6XII_113 | No text annotation | ||
| HL_6XII_107 | No text annotation | ||
| HL_6XII_108 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XII_186 | No text annotation | ||
| IL_6XII_187 | No text annotation | ||
| IL_6XII_188 | No text annotation | ||
| IL_6XII_001 | Single bulged G | ||
| IL_6XII_002 | Single bulged A | ||
| IL_6XII_003 | No text annotation | ||
| IL_6XII_004 | Minor groove platform | ||
| IL_6XII_005 | Multiple bulged bases | ||
| IL_6XII_006 | Minor groove platform with extra cWW | ||
| IL_6XII_007 | Minor groove platform | ||
| IL_6XII_189 | Single bulged G | ||
| IL_6XII_008 | Single bulged G, near cWW | ||
| IL_6XII_009 | Isolated non-canonical cWW pair | ||
| IL_6XII_010 | Minor groove platform related | ||
| IL_6XII_011 | Isolated cWH basepair | ||
| IL_6XII_190 | No text annotation | ||
| IL_6XII_012 | tWH-tWH-tHW-tHW | ||
| IL_6XII_013 | No text annotation | ||
| IL_6XII_014 | Kink-turn with non-sequential stacking | ||
| IL_6XII_015 | No text annotation | ||
| IL_6XII_016 | C-loop | ||
| IL_6XII_017 | Single bulged U | ||
| IL_6XII_018 | C-loop | ||
| IL_6XII_019 | Single bulged G | ||
| IL_6XII_020 | No text annotation | ||
| IL_6XII_021 | No text annotation | ||
| IL_6XII_022 | tSH-tHW-tWW | ||
| IL_6XII_023 | No text annotation | ||
| IL_6XII_024 | SSU/LSU pseudoknot | ||
| IL_6XII_025 | Kink-turn related | ||
| IL_6XII_026 | No text annotation | ||
| IL_6XII_027 | tSH-tHW-tHS | ||
| IL_6XII_028 | Major groove platform | ||
| IL_6XII_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6XII_030 | No text annotation | ||
| IL_6XII_031 | Major groove platform; stack outside cWW | ||
| IL_6XII_032 | Single stack bend | ||
| IL_6XII_033 | Tandem non-canonical cWW pairs | ||
| IL_6XII_034 | No text annotation | ||
| IL_6XII_035 | Kink-turn | ||
| IL_6XII_036 | Left turn | ||
| IL_6XII_037 | tSH-tHW-tHS | ||
| IL_6XII_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6XII_039 | Single bulged A | ||
| IL_6XII_040 | Single bulged G | ||
| IL_6XII_041 | Minor groove platform | ||
| IL_6XII_042 | No text annotation | ||
| IL_6XII_043 | Minor groove platform | ||
| IL_6XII_200 | Single stack bend | ||
| IL_6XII_044 | No text annotation | ||
| IL_6XII_045 | No text annotation | ||
| IL_6XII_046 | Single bulged U | ||
| IL_6XII_047 | Not an internal loop | ||
| IL_6XII_048 | Isolated cWS basepair | ||
| IL_6XII_049 | Minor groove platform | ||
| IL_6XII_050 | Single bulged U | ||
| IL_6XII_051 | Isolated non-canonical cWW pair | ||
| IL_6XII_052 | No text annotation | ||
| IL_6XII_053 | Minor groove platform | ||
| IL_6XII_054 | No text annotation | ||
| IL_6XII_055 | No text annotation | ||
| IL_6XII_056 | 180 degree turn | ||
| IL_6XII_191 | No text annotation | ||
| IL_6XII_057 | Double sheared with non-canonical cWW | ||
| IL_6XII_058 | No text annotation | ||
| IL_6XII_059 | No text annotation | ||
| IL_6XII_060 | No text annotation | ||
| IL_6XII_061 | Partly complementary | ||
| IL_6XII_062 | Isolated non-canonical cWW pair | ||
| IL_6XII_063 | Double sheared | ||
| IL_6XII_064 | Triple sheared related | ||
| IL_6XII_065 | Single bulged A | ||
| IL_6XII_066 | No text annotation | ||
| IL_6XII_067 | Triple sheared with non-canonical cWW | ||
| IL_6XII_068 | Single bulged A | ||
| IL_6XII_069 | Minor groove platform | ||
| IL_6XII_070 | No text annotation | ||
| IL_6XII_071 | Single stack bend | ||
| IL_6XII_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6XII_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6XII_074 | No text annotation | ||
| IL_6XII_075 | No text annotation | ||
| IL_6XII_076 | No text annotation | ||
| IL_6XII_077 | No text annotation | ||
| IL_6XII_078 | Double sheared | ||
| IL_6XII_079 | Isolated non-canonical cWW pair | ||
| IL_6XII_080 | AAA cross-strand stack | ||
| IL_6XII_081 | No text annotation | ||
| IL_6XII_082 | tHW-tHW cross-strand stack | ||
| IL_6XII_083 | Single bulged A | ||
| IL_6XII_084 | Single bulged G | ||
| IL_6XII_085 | Triple sheared | ||
| IL_6XII_086 | Major groove platform | ||
| IL_6XII_087 | Single stack bend | ||
| IL_6XII_088 | Single stack bend | ||
| IL_6XII_089 | Multiple bulged bases | ||
| IL_6XII_090 | 90 degree turn | ||
| IL_6XII_192 | No text annotation | ||
| IL_6XII_091 | Stack outside cWW | ||
| IL_6XII_092 | Single stack bend | ||
| IL_6XII_193 | No text annotation | ||
| IL_6XII_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6XII_094 | Single bulged G | ||
| IL_6XII_095 | C-loop with bulged stacked A's | ||
| IL_6XII_096 | Isolated non-canonical cWW pair | ||
| IL_6XII_097 | Double sheared with non-canonical cWW | ||
| IL_6XII_194 | No text annotation | ||
| IL_6XII_098 | No text annotation | ||
| IL_6XII_099 | Single bulged C | ||
| IL_6XII_100 | UAA/GAN | ||
| IL_6XII_101 | SSU/LSU pseudoknot | ||
| IL_6XII_102 | Single bulged U | ||
| IL_6XII_103 | Kink-turn related | ||
| IL_6XII_104 | No text annotation | ||
| IL_6XII_105 | Isolated non-canonical cWW pair | ||
| IL_6XII_106 | Tandem non-canonical cWW pairs | ||
| IL_6XII_107 | Kink-turn | ||
| IL_6XII_195 | No text annotation | ||
| IL_6XII_108 | No text annotation | ||
| IL_6XII_109 | Major groove platform | ||
| IL_6XII_110 | Isolated cWS basepair | ||
| IL_6XII_111 | No text annotation | ||
| IL_6XII_112 | Kink-turn | ||
| IL_6XII_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6XII_114 | Major groove platform; stack outside cWW | ||
| IL_6XII_115 | C-loop | ||
| IL_6XII_116 | UAA/GAN | ||
| IL_6XII_117 | tSH-tHW-tHS | ||
| IL_6XII_118 | Single stack bend | ||
| IL_6XII_119 | Single stack bend | ||
| IL_6XII_196 | No text annotation | ||
| IL_6XII_120 | No text annotation | ||
| IL_6XII_121 | UAA/GAN | ||
| IL_6XII_122 | Tandem non-canonical cWW pairs | ||
| IL_6XII_123 | tSH-tHW | ||
| IL_6XII_124 | Single bulged U | ||
| IL_6XII_125 | No text annotation | ||
| IL_6XII_126 | tSH-tHW-tHS | ||
| IL_6XII_127 | No text annotation | ||
| IL_6XII_201 | 180 degree turn | ||
| IL_6XII_128 | Single bulged A | ||
| IL_6XII_129 | UAA/GAN variation | ||
| IL_6XII_130 | No text annotation | ||
| IL_6XII_131 | Isolated tWW turn | ||
| IL_6XII_132 | Major groove platform; stack outside cWW | ||
| IL_6XII_197 | No text annotation | ||
| IL_6XII_133 | Intercalated tWH | ||
| IL_6XII_134 | tSH-tSH-tHH-tHS | ||
| IL_6XII_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6XII_136 | Triple sheared | ||
| IL_6XII_137 | Single bulged C | ||
| IL_6XII_138 | Single bulged A | ||
| IL_6XII_139 | Kink-turn related | ||
| IL_6XII_140 | Minor groove platform, major groove intercalation | ||
| IL_6XII_141 | Major groove intercalation | ||
| IL_6XII_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6XII_198 | No text annotation | ||
| IL_6XII_143 | UAA/GAN related | ||
| IL_6XII_144 | Bulged stacked bases | ||
| IL_6XII_145 | No text annotation | ||
| IL_6XII_146 | Major groove platform | ||
| IL_6XII_147 | No text annotation | ||
| IL_6XII_148 | No text annotation | ||
| IL_6XII_149 | Not an internal loop | ||
| IL_6XII_150 | Minor groove platform | ||
| IL_6XII_151 | Isolated tHS basepair with bulges | ||
| IL_6XII_152 | Isolated non-canonical cWW pair | ||
| IL_6XII_153 | Isolated non-canonical cWW pair | ||
| IL_6XII_154 | Isolated non-canonical cWW pair | ||
| IL_6XII_155 | Isolated non-canonical cWW pair | ||
| IL_6XII_156 | No text annotation | ||
| IL_6XII_199 | No text annotation | ||
| IL_6XII_157 | Kink-turn | ||
| IL_6XII_158 | Single bulged U | ||
| IL_6XII_159 | Double sheared | ||
| IL_6XII_160 | No text annotation | ||
| IL_6XII_161 | No text annotation | ||
| IL_6XII_162 | No text annotation | ||
| IL_6XII_163 | Major groove minor groove platform with extra cWW | ||
| IL_6XII_164 | Double sheared with non-canonical cWW | ||
| IL_6XII_165 | No text annotation | ||
| IL_6XII_166 | Isolated non-canonical cWW with bulges | ||
| IL_6XII_167 | No text annotation | ||
| IL_6XII_168 | Major groove platform with intercalation | ||
| IL_6XII_169 | No text annotation | ||
| IL_6XII_170 | Single bulged A | ||
| IL_6XII_171 | tSH-tHS-tHW | ||
| IL_6XII_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6XII_173 | C-loop | ||
| IL_6XII_174 | UAA/GAN related, with intercalation | ||
| IL_6XII_175 | Multiple bulged bases | ||
| IL_6XII_176 | UAA/GAN with extra cWW | ||
| IL_6XII_177 | No text annotation | ||
| IL_6XII_178 | Major groove intercalation | ||
| IL_6XII_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6XII_180 | tHS double platform | ||
| IL_6XII_181 | Major groove intercalation | ||
| IL_6XII_182 | No text annotation | ||
| IL_6XII_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6XII_184 | Symmetric double minor groove platform | ||
| IL_6XII_185 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XII_001 | No text annotation | ||
| J3_6XII_027 | No text annotation | ||
| J3_6XII_002 | No text annotation | ||
| J3_6XII_028 | No text annotation | ||
| J3_6XII_003 | No text annotation | ||
| J3_6XII_004 | No text annotation | ||
| J3_6XII_005 | No text annotation | ||
| J3_6XII_006 | No text annotation | ||
| J3_6XII_029 | No text annotation | ||
| J3_6XII_007 | No text annotation | ||
| J3_6XII_008 | No text annotation | ||
| J3_6XII_030 | No text annotation | ||
| J3_6XII_009 | No text annotation | ||
| J3_6XII_010 | No text annotation | ||
| J3_6XII_011 | No text annotation | ||
| J3_6XII_031 | No text annotation | ||
| J3_6XII_012 | No text annotation | ||
| J3_6XII_013 | No text annotation | ||
| J3_6XII_032 | No text annotation | ||
| J3_6XII_033 | No text annotation | ||
| J3_6XII_014 | No text annotation | ||
| J3_6XII_034 | No text annotation | ||
| J3_6XII_015 | No text annotation | ||
| J3_6XII_016 | No text annotation | ||
| J3_6XII_017 | No text annotation | ||
| J3_6XII_018 | No text annotation | ||
| J3_6XII_019 | No text annotation | ||
| J3_6XII_020 | No text annotation | ||
| J3_6XII_035 | No text annotation | ||
| J3_6XII_021 | Kink-turn 3-way junction | ||
| J3_6XII_036 | No text annotation | ||
| J3_6XII_022 | No text annotation | ||
| J3_6XII_023 | No text annotation | ||
| J3_6XII_024 | No text annotation | ||
| J3_6XII_025 | No text annotation | ||
| J3_6XII_026 | No text annotation | ||
| J4_6XII_001 | tRNA junction | ||
| J4_6XII_002 | tRNA junction | ||
| J4_6XII_003 | No text annotation | ||
| J4_6XII_004 | No text annotation | ||
| J4_6XII_005 | No text annotation | ||
| J4_6XII_006 | No text annotation | ||
| J4_6XII_007 | No text annotation | ||
| J4_6XII_008 | No text annotation | ||
| J4_6XII_009 | No text annotation | ||
| J4_6XII_010 | No text annotation | ||
| J4_6XII_011 | No text annotation | ||
| J4_6XII_012 | No text annotation | ||
| J4_6XII_013 | No text annotation | ||
| J4_6XII_014 | No text annotation | ||
| J4_6XII_015 | No text annotation | ||
| J5_6XII_001 | No text annotation | ||
| J5_6XII_002 | No text annotation | ||
| J5_6XII_003 | No text annotation | ||
| J5_6XII_004 | No text annotation | ||
| J5_6XII_005 | No text annotation | ||
| J5_6XII_006 | No text annotation | ||
| J5_6XII_007 | No text annotation | ||
| J6_6XII_001 | No text annotation | ||
| J7_6XII_001 | No text annotation | ||
| J7_6XII_002 | No text annotation |
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