HL_6XIJ_082

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6XIJ|1|a|A|1780, 6XIJ|1|a|U|1781, 6XIJ|1|a|U|1782, 6XIJ|1|a|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIJ_082 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0594

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6XIJ|1|a|U|1777
6XIJ|1|a|U|1778
6XIJ|1|a|U|1779
6XIJ|1|a|A|1780
6XIJ|1|a|U|1781
6XIJ|1|a|U|1782
6XIJ|1|a|A|1783
6XIJ|1|a|A|1784
6XIJ|1|a|A|1785
6XIJ|1|a|A|1786
6XIJ|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34