HL_6XIQ_008

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUUGGGAAUGC

Length

12 nucleotides

Bulged bases

6XIQ|1|1|G|283, 6XIQ|1|1|A|284, 6XIQ|1|1|A|285, 6XIQ|1|1|U|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|277
6XIQ|1|1|U|278
6XIQ|1|1|U|279
6XIQ|1|1|U|280
6XIQ|1|1|G|281
6XIQ|1|1|G|282
6XIQ|1|1|G|283
6XIQ|1|1|A|284
6XIQ|1|1|A|285
6XIQ|1|1|U|286
6XIQ|1|1|G|287
6XIQ|1|1|C|288

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain a

60S ribosomal protein L28

Chain i

60S ribosomal protein L36-A

Chain o

60S ribosomal protein L42-A