6XIQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XIQ_001 | 1/1/38:45 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_6XIQ_002 | 1/1/69:74 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6XIQ_003 | 1/1/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6XIQ_121 | 1/1/128:140 | No text annotation | ||
| HL_6XIQ_004 | 1/1/132:137 | No text annotation | ||
| HL_6XIQ_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6XIQ_006 | 1/1/208:212 | No text annotation | ||
| HL_6XIQ_007 | 1/1/216:224 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6XIQ_008 | 1/1/277:288 | No text annotation | ||
| HL_6XIQ_009 | 1/1/303:312 | No text annotation | ||
| HL_6XIQ_127 | 1/1/357:362 | No text annotation | ||
| HL_6XIQ_128 | 1/1/382:387 | No text annotation | ||
| HL_6XIQ_013 | 1/1/544:547 | No text annotation | ||
| HL_6XIQ_014 | 1/1/599:604 | No text annotation | ||
| HL_6XIQ_015 | 1/1/640:649 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_016 | 1/1/687:693 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6XIQ_017 | 1/1/732:737 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6XIQ_018 | 1/1/763:768 | No text annotation | ||
| HL_6XIQ_019 | 1/1/844:849 | No text annotation | ||
| HL_6XIQ_020 | 1/1/876:885 | No text annotation | ||
| HL_6XIQ_021 | 1/1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6XIQ_022 | 1/1/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_6XIQ_023 | 1/1/1023:1029 | No text annotation | ||
| HL_6XIQ_024 | 1/1/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_6XIQ_025 | 1/1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6XIQ_026 | 1/1/1149:1155 | No text annotation | ||
| HL_6XIQ_027 | 1/1/1239:1249 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_028 | 1/1/1262:1277 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_029 | 1/1/1347:1357 | No text annotation | ||
| HL_6XIQ_030 | 1/1/1403:1408 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_031 | 1/1/1462:1470 | No text annotation | ||
| HL_6XIQ_032 | 1/1/1500:1516 | No text annotation | ||
| HL_6XIQ_033 | 1/1/1544:1549 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6XIQ_034 | 1/1/1567:1571 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6XIQ_035 | 1/1/1599:1608 | No text annotation | ||
| HL_6XIQ_036 | 1/1/1635:1639 | No text annotation | ||
| HL_6XIQ_037 | 1/1/1679:1689 | No text annotation | geometric HL_5ID6_001 HL_69752.2 | |
| HL_6XIQ_038 | 1/1/1719:1725 | No text annotation | ||
| HL_6XIQ_039 | 1/1/1759:1766 | Mini UNCG | geometric HL_6MSF_002 HL_48778.2 | |
| HL_6XIQ_040 | 1/1/1792:1796 | No text annotation | geometric HL_8K2Z_002 NA | |
| HL_6XIQ_041 | 1/1/1844:1851 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_6XIQ_124 | 1/1/1862:1868 | GNRA | homologous HL_8C3A_042 NA | |
| HL_6XIQ_043 | 1/1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6XIQ_045 | 1/1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6XIQ_046 | 1/1/2134:2146 | No text annotation | ||
| HL_6XIQ_047 | 1/1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6XIQ_048 | 1/1/2219:2226 | No text annotation | ||
| HL_6XIQ_049 | 1/1/2253:2263 | No text annotation | ||
| HL_6XIQ_129 | 1/1/2290:2302 | No text annotation | ||
| HL_6XIQ_051 | 1/1/2369:2378 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6XIQ_052 | 1/1/2469:2476 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_053 | 1/1/2534:2545 | No text annotation | ||
| HL_6XIQ_054 | 1/1/2568:2573 | No text annotation | homologous HL_8C3A_054 NA | |
| HL_6XIQ_055 | 1/1/2616:2624 | No text annotation | ||
| HL_6XIQ_056 | 1/1/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6XIQ_057 | 1/1/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6XIQ_058 | 1/1/2693:2700 | No text annotation | ||
| HL_6XIQ_059 | 1/1/2719:2738 | No text annotation | ||
| HL_6XIQ_060 | 1/1/2744:2749 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6XIQ_061 | 1/1/2776:2784 | No text annotation | ||
| HL_6XIQ_062 | 1/1/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_6XIQ_063 | 1/1/2896:2905 | No text annotation | ||
| HL_6XIQ_064 | 1/1/2920:2926 | No text annotation | ||
| HL_6XIQ_065 | 1/1/2963:2968 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6XIQ_066 | 1/1/3025:3030 | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_6XIQ_067 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6XIQ_068 | 1/1/3110:3124 | No text annotation | ||
| HL_6XIQ_069 | 1/1/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_6XIQ_070 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6XIQ_071 | 1/1/3350:3353 | Mini UNCG | homologous HL_5TBW_071 NA | |
| HL_6XIQ_072 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6XIQ_073 | 1/2/57:90 | No text annotation | ||
| HL_6XIQ_074 | 1/2/149:165 | No text annotation | ||
| HL_6XIQ_075 | 1/2/190:196 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6XIQ_076 | 1/2/230:235 | No text annotation | ||
| HL_6XIQ_077 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6XIQ_078 | 1/2/276:279 | Mini UNCG | geometric HL_5U30_001 HL_48778.2 | |
| HL_6XIQ_079 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_6XIQ_080 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6XIQ_081 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6XIQ_082 | 1/2/415:419 | No text annotation | ||
| HL_6XIQ_083 | 1/2/450:456 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6XIQ_084 | 1/2/491:496 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_085 | 1/2/520:532 | No text annotation | ||
| HL_6XIQ_086 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6XIQ_088 | 1/2/717:722 | No text annotation | ||
| HL_6XIQ_089 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6XIQ_090 | 1/2/777:783 | No text annotation | ||
| HL_6XIQ_125 | 1/2/828:844 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_6XIQ_091 | 1/2/829:843 | No text annotation | ||
| HL_6XIQ_092 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6XIQ_093 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_6XIQ_094 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6XIQ_096 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_6XIQ_097 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_6XIQ_098 | 1/2/1188:1197 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_6XIQ_100 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_6XIQ_101 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6XIQ_102 | 1/2/1358:1365 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6XIQ_126 | 1/2/1396:1402 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_6XIQ_104 | 1/2/1501:1506 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6XIQ_105 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6XIQ_106 | 1/2/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_6XIQ_107 | 1/2/1697:1703 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIQ_108 | 1/2/1778:1784 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6XIQ_109 | 1/3/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6XIQ_110 | 1/3/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6XIQ_111 | 1/4/47:56 | No text annotation | ||
| HL_6XIQ_112 | 1/4/68:91 | No text annotation | ||
| HL_6XIQ_113 | 1/4/107:115 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_6XIQ_114 | 1/4/123:130 | No text annotation | ||
| HL_6XIQ_115 | 1/AX/13:22 | No text annotation | homologous HL_2AKE_001 NA | |
| HL_6XIQ_116 | 1/AX/30:40 | No text annotation | ||
| HL_6XIQ_117 | 1/AX/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4RDX_003 HL_28252.8 | |
| HL_6XIQ_118 | 1/AZ/13:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_6XIQ_119 | 1/AZ/30:40 | No text annotation | ||
| HL_6XIQ_120 | 1/AZ/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4RDX_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XIQ_010 | No text annotation | ||
| HL_6XIQ_011 | No text annotation | ||
| HL_6XIQ_012 | No text annotation | ||
| HL_6XIQ_122 | No text annotation | ||
| HL_6XIQ_123 | No text annotation | ||
| HL_6XIQ_042 | No text annotation | ||
| HL_6XIQ_044 | No text annotation | ||
| HL_6XIQ_050 | No text annotation | ||
| HL_6XIQ_087 | Externally structured | ||
| HL_6XIQ_095 | No text annotation | ||
| HL_6XIQ_099 | No text annotation | ||
| HL_6XIQ_103 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XIQ_001 | 1/1/7:8, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6XIQ_002 | 1/1/13:15, 1/4/144:145 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_6XIQ_003 | 1/1/31:38, 1/1/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_6XIQ_004 | 1/1/82:89, 1/1/97:103 | No text annotation | ||
| IL_6XIQ_005 | 1/1/125:127, 1/1/141:143 | No text annotation | ||
| IL_6XIQ_006 | 1/1/128:132, 1/1/137:140 | No text annotation | ||
| IL_6XIQ_007 | 1/1/163:166, 1/1/256:258 | No text annotation | ||
| IL_6XIQ_008 | 1/1/169:171, 1/1/247:253 | No text annotation | ||
| IL_6XIQ_254 | 1/1/177:179, 1/1/237:241 | No text annotation | ||
| IL_6XIQ_010 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_6XIQ_011 | 1/1/215:216, 1/1/224:226 | No text annotation | ||
| IL_6XIQ_219 | 1/1/404:412, 1/4/11:19 | No text annotation | ||
| IL_6XIQ_012 | 1/1/429:433, 1/1/626:630 | No text annotation | ||
| IL_6XIQ_255 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8P9A_246 IL_31462.6 | |
| IL_6XIQ_014 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6XIQ_015 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6XIQ_016 | 1/1/663:665, 1/1/796:799 | No text annotation | ||
| IL_6XIQ_017 | 1/1/665:667, 1/1/795:796 | No text annotation | ||
| IL_6XIQ_256 | 1/1/667:670, 1/1/792:795 | No text annotation | ||
| IL_6XIQ_019 | 1/1/678:684, 1/1/696:702 | No text annotation | ||
| IL_6XIQ_257 | 1/1/724:728, 1/1/741:746 | No text annotation | ||
| IL_6XIQ_021 | 1/1/752:753, 1/1/779:781 | No text annotation | ||
| IL_6XIQ_022 | 1/1/753:757, 1/1/774:779 | No text annotation | ||
| IL_6XIQ_023 | 1/1/757:763, 1/1/768:774 | No text annotation | ||
| IL_6XIQ_024 | 1/1/804:805, 1/1/938:940 | No text annotation | ||
| IL_6XIQ_025 | 1/1/805:809, 1/1/931:938 | No text annotation | ||
| IL_6XIQ_026 | 1/1/869:872, 1/1/888:890 | No text annotation | ||
| IL_6XIQ_027 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6XIQ_028 | 1/1/907:909, 1/1/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6XIQ_258 | 1/1/955:957, 1/1/964:965 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6XIQ_030 | 1/1/969:972, 1/1/1108:1113 | No text annotation | ||
| IL_6XIQ_031 | 1/1/972:975, 1/1/1106:1108 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6XIQ_221 | 1/1/972:977, 1/1/1104:1108 | No text annotation | ||
| IL_6XIQ_032 | 1/1/977:981, 1/1/1102:1104 | No text annotation | ||
| IL_6XIQ_033 | 1/1/991:997, 1/1/1052:1058 | No text annotation | ||
| IL_6XIQ_034 | 1/1/997:999, 1/1/1049:1052 | No text annotation | ||
| IL_6XIQ_035 | 1/1/999:1005, 1/1/1045:1049 | No text annotation | ||
| IL_6XIQ_036 | 1/1/1005:1009, 1/1/1041:1045 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_6XIQ_037 | 1/1/1009:1011, 1/1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6XIQ_038 | 1/1/1014:1020, 1/1/1032:1036 | No text annotation | ||
| IL_6XIQ_039 | 1/1/1069:1072, 1/1/1086:1089 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_77658.1 | |
| IL_6XIQ_040 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_6XIQ_041 | 1/1/1120:1121, 1/1/1136:1138 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6XIQ_259 | 1/1/1122:1125, 1/1/1133:1135 | No text annotation | ||
| IL_6XIQ_043 | 1/1/1147:1149, 1/1/1155:1156 | No text annotation | ||
| IL_6XIQ_044 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation | ||
| IL_6XIQ_045 | 1/1/1172:1183, 1/1/1323:1327 | No text annotation | ||
| IL_6XIQ_046 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | homologous IL_8P9A_279 IL_77278.1 | |
| IL_6XIQ_047 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | homologous IL_8P9A_280 IL_83149.1 | |
| IL_6XIQ_048 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6XIQ_049 | 1/1/1218:1226, 1/1/1283:1287 | No text annotation | ||
| IL_6XIQ_260 | 1/1/1228:1230, 1/1/1280:1281 | No text annotation | ||
| IL_6XIQ_051 | 1/1/1233:1238, 1/1/1250:1255 | No text annotation | ||
| IL_6XIQ_052 | 1/1/1376:1381, 1/1/1425:1431 | No text annotation | ||
| IL_6XIQ_053 | 1/1/1383:1387, 1/1/1420:1423 | No text annotation | ||
| IL_6XIQ_054 | 1/1/1388:1402, 1/1/1409:1419 | No text annotation | ||
| IL_6XIQ_055 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | ||
| IL_6XIQ_056 | 1/1/1485:1487, 1/1/1854:1857 | No text annotation | ||
| IL_6XIQ_057 | 1/1/1492:1494, 1/1/1835:1836 | No text annotation | ||
| IL_6XIQ_058 | 1/1/1532:1536, 1/1/1585:1590 | No text annotation | ||
| IL_6XIQ_059 | 1/1/1561:1562, 1/1/1577:1579 | No text annotation | ||
| IL_6XIQ_222 | 1/1/1563:1566, 1/1/1572:1576 | No text annotation | ||
| IL_6XIQ_060 | 1/1/1565:1566, 1/1/1572:1574 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_6XIQ_223 | 1/1/1618:1620, 1/1/1825:1826 | Single bulged A | geometric IL_5J7L_064 IL_31462.6 | |
| IL_6XIQ_062 | 1/1/1623:1624, 1/1/1819:1822 | No text annotation | ||
| IL_6XIQ_261 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | ||
| IL_6XIQ_064 | 1/1/1633:1635, 1/1/1639:1640 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6XIQ_225 | 1/1/1653:1658, 1/1/1791:1802 | No text annotation | ||
| IL_6XIQ_065 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | geometric IL_6WBR_001 IL_57744.1 | |
| IL_6XIQ_066 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_6XIQ_067 | 1/1/1670:1672, 1/1/1775:1778 | No text annotation | ||
| IL_6XIQ_068 | 1/1/1701:1707, 1/1/1737:1744 | No text annotation | ||
| IL_6XIQ_069 | 1/1/1711:1718, 1/1/1726:1733 | No text annotation | ||
| IL_6XIQ_070 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6XIQ_071 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6XIQ_072 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_6XIQ_073 | 1/1/1917:1923, 1/1/1928:1935 | No text annotation | ||
| IL_6XIQ_074 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation | ||
| IL_6XIQ_075 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | ||
| IL_6XIQ_076 | 1/1/1951:1953, 1/1/2094:2095 | No text annotation | ||
| IL_6XIQ_077 | 1/1/2128:2130, 1/1/2322:2325 | Isolated non-canonical cWW pair | geometric IL_4V9K_064 IL_87907.2 | |
| IL_6XIQ_078 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation | ||
| IL_6XIQ_079 | 1/1/2196:2199, 1/1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6XIQ_080 | 1/1/2200:2202, 1/1/2240:2244 | No text annotation | ||
| IL_6XIQ_081 | 1/1/2204:2206, 1/1/2237:2238 | No text annotation | ||
| IL_6XIQ_082 | 1/1/2206:2210, 1/1/2235:2237 | No text annotation | ||
| IL_6XIQ_083 | 1/1/2210:2217, 1/1/2228:2235 | No text annotation | ||
| IL_6XIQ_084 | 1/1/2276:2278, 1/1/2307:2310 | Single stack bend | geometric IL_5J7L_391 IL_26793.1 | |
| IL_6XIQ_228 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | ||
| IL_6XIQ_085 | 1/1/2278:2288, 1/1/2304:2307 | No text annotation | ||
| IL_6XIQ_086 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | ||
| IL_6XIQ_088 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | geometric IL_2OIU_003 IL_89505.4 | |
| IL_6XIQ_089 | 1/1/2412:2413, 1/1/2807:2810 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_6XIQ_090 | 1/1/2444:2449, 1/1/2497:2503 | No text annotation | ||
| IL_6XIQ_091 | 1/1/2451:2462, 1/1/2493:2495 | No text annotation | ||
| IL_6XIQ_092 | 1/1/2466:2469, 1/1/2476:2489 | No text annotation | ||
| IL_6XIQ_093 | 1/1/2519:2526, 1/1/2584:2588 | No text annotation | ||
| IL_6XIQ_094 | 1/1/2614:2615, 1/1/2625:2627 | No text annotation | ||
| IL_6XIQ_095 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6XIQ_096 | 1/1/2716:2718, 1/1/2739:2740 | No text annotation | ||
| IL_6XIQ_097 | 1/1/2770:2776, 1/1/2784:2788 | No text annotation | ||
| IL_6XIQ_098 | 1/1/2833:2839, 1/1/2849:2855 | No text annotation | ||
| IL_6XIQ_099 | 1/1/2875:2878, 1/1/2948:2952 | No text annotation | ||
| IL_6XIQ_100 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation | ||
| IL_6XIQ_231 | 1/1/2879:2884, 1/1/2938:2947 | No text annotation | ||
| IL_6XIQ_101 | 1/1/2881:2884, 1/1/2938:2943 | No text annotation | ||
| IL_6XIQ_102 | 1/1/2889:2893, 1/1/2908:2914 | No text annotation | ||
| IL_6XIQ_103 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation | ||
| IL_6XIQ_104 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_6XIQ_105 | 1/1/3004:3008, 1/1/3138:3144 | No text annotation | ||
| IL_6XIQ_106 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6XIQ_232 | 1/1/3015:3025, 1/1/3030:3039 | No text annotation | ||
| IL_6XIQ_107 | 1/1/3047:3053, 1/1/3089:3094 | No text annotation | ||
| IL_6XIQ_108 | 1/1/3053:3059, 1/1/3084:3089 | No text annotation | ||
| IL_6XIQ_233 | 1/1/3062:3064, 1/1/3077:3081 | No text annotation | ||
| IL_6XIQ_110 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation | ||
| IL_6XIQ_234 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation | geometric IL_6RTI_005 IL_14688.1 | |
| IL_6XIQ_235 | 1/1/3166:3170, 1/1/3280:3284 | No text annotation | ||
| IL_6XIQ_112 | 1/1/3168:3170, 1/1/3280:3281 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6XIQ_113 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_6XIQ_114 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_6XIQ_115 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_6XIQ_236 | 1/1/3216:3221, 1/1/3264:3265 | Single stack bend with bulge | geometric IL_5TBW_101 NA | |
| IL_6XIQ_262 | 1/1/3225:3232, 1/1/3255:3260 | No text annotation | ||
| IL_6XIQ_117 | 1/1/3233:3235, 1/1/3253:3254 | No text annotation | ||
| IL_6XIQ_118 | 1/1/3235:3238, 1/1/3249:3253 | No text annotation | ||
| IL_6XIQ_238 | 1/1/3298:3337, 1/1/3367:3390 | No text annotation | ||
| IL_6XIQ_119 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6XIQ_120 | 1/1/3342:3345, 1/1/3360:3363 | No text annotation | ||
| IL_6XIQ_121 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_6XIQ_122 | 1/2/22:26, 1/2/600:603 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_85033.2 | |
| IL_6XIQ_123 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6XIQ_124 | 1/2/37:41, 1/2/466:471 | Triple sheared | geometric IL_7A0S_087 IL_17948.2 | |
| IL_6XIQ_125 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6XIQ_126 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6XIQ_127 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_6XIQ_128 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6XIQ_129 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6XIQ_130 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6XIQ_131 | 1/2/186:190, 1/2/196:199 | No text annotation | ||
| IL_6XIQ_132 | 1/2/204:210, 1/2/255:263 | No text annotation | ||
| IL_6XIQ_133 | 1/2/210:212, 1/2/254:255 | No text annotation | ||
| IL_6XIQ_134 | 1/2/212:213, 1/2/252:254 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_6XIQ_135 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6XIQ_136 | 1/2/270:274, 1/2/282:285 | No text annotation | ||
| IL_6XIQ_239 | 1/2/270:276, 1/2/279:285 | No text annotation | ||
| IL_6XIQ_137 | 1/2/274:276, 1/2/279:282 | Isolated non-canonical cWW pair | geometric IL_4P3U_001 IL_87907.2 | |
| IL_6XIQ_138 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6XIQ_240 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_8P9A_392 IL_47074.2 | |
| IL_6XIQ_140 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6XIQ_141 | 1/2/411:413, 1/2/421:422 | No text annotation | ||
| IL_6XIQ_142 | 1/2/413:415, 1/2/419:421 | No text annotation | ||
| IL_6XIQ_143 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6XIQ_144 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6XIQ_145 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6XIQ_146 | 1/2/481:482, 1/2/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_6XIQ_242 | 1/2/485:490, 1/2/498:502 | No text annotation | ||
| IL_6XIQ_147 | 1/2/487:490, 1/2/498:500 | No text annotation | ||
| IL_6XIQ_148 | 1/2/490:491, 1/2/496:498 | No text annotation | ||
| IL_6XIQ_149 | 1/2/514:516, 1/2/536:543 | No text annotation | ||
| IL_6XIQ_150 | 1/2/516:518, 1/2/533:536 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6XIQ_151 | 1/2/518:520, 1/2/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_6XIQ_152 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6XIQ_153 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6XIQ_154 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6XIQ_155 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6XIQ_156 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6XIQ_157 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6XIQ_158 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_6XIQ_243 | 1/2/703:712, 1/2/726:735 | No text annotation | ||
| IL_6XIQ_159 | 1/2/714:717, 1/2/722:724 | No text annotation | ||
| IL_6XIQ_160 | 1/2/746:747, 1/2/802:805 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6XIQ_161 | 1/2/747:750, 1/2/799:802 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_77658.1 | |
| IL_6XIQ_263 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_8CRE_430 IL_59049.1 | |
| IL_6XIQ_163 | 1/2/817:822, 1/2/850:854 | No text annotation | homologous IL_8P9A_416 NA | |
| IL_6XIQ_164 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_6XIQ_264 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_6XIQ_166 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6XIQ_167 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6XIQ_168 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6XIQ_169 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6XIQ_170 | 1/2/985:990, 1/2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_6XIQ_171 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6XIQ_172 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6XIQ_173 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6XIQ_174 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_6XIQ_175 | 1/2/1111:1119, 1/2/1128:1134 | 9x7 Sarcin-Ricin with inserted C; G-bulge | geometric IL_6CZR_146 NA | |
| IL_6XIQ_176 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6XIQ_177 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6XIQ_178 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_6XIQ_179 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6XIQ_180 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6XIQ_181 | 1/2/1211:1213, 1/2/1451:1452 | No text annotation | ||
| IL_6XIQ_182 | 1/2/1213:1215, 1/2/1448:1451 | No text annotation | ||
| IL_6XIQ_183 | 1/2/1222:1223, 1/2/1259:1261 | No text annotation | ||
| IL_6XIQ_184 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6XIQ_265 | 1/2/1272:1275, 1/2/1437:1438 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.4 | |
| IL_6XIQ_186 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6XIQ_187 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6XIQ_188 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6XIQ_189 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6XIQ_190 | 1/2/1335:1337, 1/2/1415:1416 | No text annotation | ||
| IL_6XIQ_191 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_6XIQ_247 | 1/2/1342:1348, 1/2/1377:1383 | No text annotation | ||
| IL_6XIQ_192 | 1/2/1344:1348, 1/2/1377:1381 | No text annotation | ||
| IL_6XIQ_193 | 1/2/1349:1352, 1/2/1374:1376 | No text annotation | ||
| IL_6XIQ_194 | 1/2/1352:1355, 1/2/1368:1374 | No text annotation | ||
| IL_6XIQ_195 | 1/2/1389:1391, 1/2/1407:1412 | No text annotation | ||
| IL_6XIQ_196 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | ||
| IL_6XIQ_197 | 1/2/1488:1495, 1/2/1513:1518 | No text annotation | ||
| IL_6XIQ_198 | 1/2/1495:1498, 1/2/1509:1513 | No text annotation | ||
| IL_6XIQ_266 | 1/2/1496:1499, 1/2/1509:1512 | No text annotation | ||
| IL_6XIQ_250 | 1/2/1499:1501, 1/2/1506:1509 | No text annotation | ||
| IL_6XIQ_199 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_6XIQ_200 | 1/2/1636:1644, 1/2/1757:1767 | No text annotation | ||
| IL_6XIQ_201 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_6XIQ_202 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6XIQ_203 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_6XIQ_204 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6XIQ_205 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6XIQ_206 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_6XIQ_251 | 1/2/1669:1674, 1/2/1727:1732 | No text annotation | ||
| IL_6XIQ_207 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_6XIQ_208 | 1/2/1675:1678, 1/2/1723:1726 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_6XIQ_209 | 1/2/1678:1683, 1/2/1718:1723 | No text annotation | ||
| IL_6XIQ_210 | 1/2/1686:1690, 1/2/1711:1715 | No text annotation | ||
| IL_6XIQ_211 | 1/2/1691:1697, 1/2/1703:1710 | No text annotation | ||
| IL_6XIQ_212 | 1/2/1776:1778, 1/2/1784:1785 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6XIQ_213 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6XIQ_252 | 1/3/21:30, 1/3/47:58 | No text annotation | ||
| IL_6XIQ_214 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6XIQ_215 | 1/3/72:80, 1/3/100:106 | No text annotation | ||
| IL_6XIQ_216 | 1/3/80:87, 1/3/94:100 | No text annotation | ||
| IL_6XIQ_253 | 1/4/43:64, 1/4/96:102 | No text annotation | ||
| IL_6XIQ_217 | 1/4/64:68, 1/4/91:96 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XIQ_218 | No text annotation | ||
| IL_6XIQ_009 | No text annotation | ||
| IL_6XIQ_013 | No text annotation | ||
| IL_6XIQ_018 | No text annotation | ||
| IL_6XIQ_220 | No text annotation | ||
| IL_6XIQ_020 | No text annotation | ||
| IL_6XIQ_029 | No text annotation | ||
| IL_6XIQ_042 | No text annotation | ||
| IL_6XIQ_050 | No text annotation | ||
| IL_6XIQ_061 | Isolated non-canonical cWW pair | ||
| IL_6XIQ_063 | No text annotation | ||
| IL_6XIQ_224 | No text annotation | ||
| IL_6XIQ_226 | No text annotation | ||
| IL_6XIQ_227 | No text annotation | ||
| IL_6XIQ_087 | No text annotation | ||
| IL_6XIQ_229 | No text annotation | ||
| IL_6XIQ_230 | No text annotation | ||
| IL_6XIQ_109 | No text annotation | ||
| IL_6XIQ_111 | No text annotation | ||
| IL_6XIQ_116 | No text annotation | ||
| IL_6XIQ_237 | No text annotation | ||
| IL_6XIQ_139 | No text annotation | ||
| IL_6XIQ_241 | Isolated non-canonical cWW pair | ||
| IL_6XIQ_162 | No text annotation | ||
| IL_6XIQ_165 | Tandem non-canonical cWW pairs | ||
| IL_6XIQ_244 | Isolated cWH basepair | ||
| IL_6XIQ_245 | No text annotation | ||
| IL_6XIQ_246 | No text annotation | ||
| IL_6XIQ_185 | Tandem non-canonical cWW pairs | ||
| IL_6XIQ_248 | No text annotation | ||
| IL_6XIQ_249 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XIQ_025 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_6XIQ_026 | 1/1/185:189, 1/1/205:215, 1/1/226:231 | No text annotation | ||
| J3_6XIQ_027 | 1/1/335:356, 1/1/363:368, 1/4/21:28 | No text annotation | ||
| J3_6XIQ_028 | 1/1/368:380, 1/1/389:404, 1/4/19:21 | No text annotation | ||
| J3_6XIQ_029 | 1/1/435:443, 1/1/492:495, 1/1/618:624 | No text annotation | ||
| J3_6XIQ_001 | 1/1/501:503, 1/1/588:597, 1/1/606:612 | No text annotation | ||
| J3_6XIQ_030 | 1/1/812:821, 1/1/904:907, 1/1/923:928 | No text annotation | ||
| J3_6XIQ_031 | 1/1/812:821, 1/1/904:909, 1/1/919:928 | No text annotation | ||
| J3_6XIQ_032 | 1/1/828:838, 1/1/855:868, 1/1/891:897 | No text annotation | ||
| J3_6XIQ_033 | 1/1/982:987, 1/1/1062:1066, 1/1/1092:1101 | No text annotation | ||
| J3_6XIQ_002 | 1/1/1230:1233, 1/1/1255:1262, 1/1/1277:1280 | No text annotation | ||
| J3_6XIQ_034 | 1/1/1230:1238, 1/1/1250:1262, 1/1/1277:1280 | No text annotation | ||
| J3_6XIQ_003 | 1/1/1478:1485, 1/1/1857:1860, 1/1/1870:1875 | No text annotation | ||
| J3_6XIQ_035 | 1/1/1485:1491, 1/1/1837:1843, 1/1/1852:1857 | No text annotation | ||
| J3_6XIQ_004 | 1/1/1487:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | ||
| J3_6XIQ_005 | 1/1/1494:1497, 1/1/1519:1527, 1/1/1833:1835 | No text annotation | ||
| J3_6XIQ_006 | 1/1/1537:1542, 1/1/1551:1561, 1/1/1579:1584 | No text annotation | ||
| J3_6XIQ_007 | 1/1/1631:1632, 1/1/1641:1650, 1/1/1805:1811 | No text annotation | ||
| J3_6XIQ_045 | 1/1/1631:1633, 1/1/1640:1649, 1/1/1806:1811 | No text annotation | ||
| J3_6XIQ_046 | 1/1/2422:2435, 1/1/2512:2517, 1/1/2590:2608 | No text annotation | ||
| J3_6XIQ_038 | 1/1/2528:2533, 1/1/2546:2563, 1/1/2578:2582 | No text annotation | ||
| J3_6XIQ_008 | 1/1/2651:2653, 1/1/2754:2768, 1/1/2790:2798 | No text annotation | ||
| J3_6XIQ_009 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | ||
| J3_6XIQ_010 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | ||
| J3_6XIQ_039 | 1/1/3171:3177, 1/1/3211:3216, 1/1/3265:3279 | No text annotation | ||
| J3_6XIQ_011 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_6XIQ_040 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_6XIQ_012 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6XIQ_041 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_6XIQ_047 | 1/2/760:763, 1/2/773:776, 1/2/784:790 | No text annotation | ||
| J3_6XIQ_013 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6XIQ_043 | 1/2/881:888, 1/2/924:936, 1/2/943:947 | No text annotation | ||
| J3_6XIQ_014 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_6XIQ_015 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | ||
| J3_6XIQ_016 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6XIQ_017 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6XIQ_018 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6XIQ_019 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6XIQ_020 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6XIQ_044 | 1/2/1335:1338, 1/2/1386:1389, 1/2/1412:1416 | No text annotation | ||
| J3_6XIQ_021 | 1/2/1337:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | ||
| J3_6XIQ_022 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | ||
| J3_6XIQ_023 | 1/3/9:14, 1/3/66:69, 1/3/109:112 | No text annotation | ||
| J3_6XIQ_024 | 1/4/43:47, 1/4/56:64, 1/4/96:102 | No text annotation | ||
| J4_6XIQ_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | ||
| J4_6XIQ_002 | 1/1/185:189, 1/1/205:208, 1/1/212:215, 1/1/226:231 | No text annotation | ||
| J4_6XIQ_003 | 1/1/675:678, 1/1/702:722, 1/1/748:752, 1/1/781:787 | No text annotation | ||
| J4_6XIQ_004 | 1/1/1451:1458, 1/1/1474:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | ||
| J4_6XIQ_016 | 1/1/1528:1531, 1/1/1591:1596, 1/1/1611:1615, 1/1/1829:1832 | No text annotation | ||
| J4_6XIQ_006 | 1/1/1674:1675, 1/1/1693:1698, 1/1/1747:1754, 1/1/1771:1773 | No text annotation | ||
| J4_6XIQ_007 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6XIQ_008 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2277, 1/1/2307:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_6XIQ_009 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | ||
| J4_6XIQ_010 | 1/1/3010:3014, 1/1/3040:3043, 1/1/3098:3101, 1/1/3133:3136 | No text annotation | ||
| J4_6XIQ_017 | 1/2/54:97, 1/2/386:391, 1/2/406:411, 1/2/422:426 | No text annotation | ||
| J4_6XIQ_012 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_6XIQ_013 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6XIQ_018 | 1/AX/3:10, 1/AX/25:27, 1/AX/43:49, 1/AX/65:70 | No text annotation | ||
| J4_6XIQ_015 | 1/AZ/6:10, 1/AZ/25:27, 1/AZ/43:49, 1/AZ/65:67 | No text annotation | ||
| J5_6XIQ_001 | 1/1/658:663, 1/1/799:803, 1/1/941:944, 1/1/1375:1381, 1/1/1425:1437 | No text annotation | ||
| J5_6XIQ_009 | 1/1/1898:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2337 | No text annotation | ||
| J5_6XIQ_010 | 1/1/2396:2406, 1/1/2815:2830, 1/1/2858:2878, 1/1/2948:2960, 1/1/2972:2984 | No text annotation | ||
| J5_6XIQ_004 | 1/1/2414:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2806 | No text annotation | ||
| J5_6XIQ_005 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:547, 1/2/591:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_6XIQ_006 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:547, 1/2/591:595 | No text annotation | ||
| J5_6XIQ_007 | 1/2/123:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:294 | No text annotation | ||
| J5_6XIQ_011 | 1/2/636:641, 1/2/693:698, 1/2/740:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J7_6XIQ_003 | 1/1/949:955, 1/1/965:969, 1/1/1113:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation | ||
| J7_6XIQ_004 | 1/1/949:955, 1/1/965:972, 1/1/1108:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation | ||
| J9_6XIQ_001 | 1/1/20:28, 1/1/56:68, 1/1/75:80, 1/1/105:110, 1/1/321:331, 1/4/32:43, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XIQ_036 | No text annotation | ||
| J3_6XIQ_037 | No text annotation | ||
| J3_6XIQ_042 | No text annotation | ||
| J4_6XIQ_005 | No text annotation | ||
| J4_6XIQ_011 | No text annotation | ||
| J4_6XIQ_014 | No text annotation | ||
| J5_6XIQ_002 | No text annotation | ||
| J5_6XIQ_003 | No text annotation | ||
| J5_6XIQ_008 | No text annotation | ||
| J7_6XIQ_001 | No text annotation | ||
| J7_6XIQ_002 | No text annotation |
Coloring options: