HL_6XIQ_033

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

6XIQ|1|1|C|1548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_033 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2719

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6XIQ|1|1|G|1544
6XIQ|1|1|A|1545
6XIQ|1|1|A|1546
6XIQ|1|1|G|1547
6XIQ|1|1|C|1548
6XIQ|1|1|U|1549

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L37-A