HL_6XIQ_039

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6XIQ|1|1|A|1760, 6XIQ|1|1|C|1762, 6XIQ|1|1|U|1763, 6XIQ|1|1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_039 not in the Motif Atlas

Geometric match to HL_6MSF_002

Geometric discrepancy: 0.3492

The information below is about HL_6MSF_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6XIQ|1|1|C|1759
6XIQ|1|1|A|1760
6XIQ|1|1|C|1761
6XIQ|1|1|C|1762
6XIQ|1|1|U|1763
6XIQ|1|1|U|1764
6XIQ|1|1|U|1765
6XIQ|1|1|G|1766

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A

Chain X

60S ribosomal protein L25