HL_6XIQ_040
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CCGUG
- Length
- 5 nucleotides
- Bulged bases
- 6XIQ|1|1|C|1793, 6XIQ|1|1|G|1794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_040 not in the Motif Atlas
- Geometric match to HL_8K2Z_002
- Geometric discrepancy: 0.2544
- The information below is about HL_8K2Z_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_04852.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6XIQ|1|1|C|1792
6XIQ|1|1|C|1793
6XIQ|1|1|G|1794
6XIQ|1|1|U|1795
6XIQ|1|1|G|1796
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L43-A
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