HL_6XIQ_040

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6XIQ|1|1|C|1793, 6XIQ|1|1|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_040 not in the Motif Atlas

Geometric match to HL_8K2Z_002

Geometric discrepancy: 0.2544

The information below is about HL_8K2Z_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04852.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6XIQ|1|1|C|1792
6XIQ|1|1|C|1793
6XIQ|1|1|G|1794
6XIQ|1|1|U|1795
6XIQ|1|1|G|1796

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A