HL_6XIQ_066

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

6XIQ|1|1|A|3027, 6XIQ|1|1|G|3028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_066 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2381

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6XIQ|1|1|C|3025
6XIQ|1|1|G|3026
6XIQ|1|1|A|3027
6XIQ|1|1|G|3028
6XIQ|1|1|A|3029
6XIQ|1|1|G|3030

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain H

RPL9A isoform 1

Chain P0

RPP0 isoform 1