HL_6XIQ_075

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUUUGG

Length

7 nucleotides

Bulged bases

6XIQ|1|2|U|192, 6XIQ|1|2|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_075 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1963

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6XIQ|1|2|C|190
6XIQ|1|2|C|191
6XIQ|1|2|U|192
6XIQ|1|2|U|193
6XIQ|1|2|U|194
6XIQ|1|2|G|195
6XIQ|1|2|G|196

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain y

RPS8A isoform 1