HL_6XIQ_098
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6XIQ|1|2|U|1191, 6XIQ|1|2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_098 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.2883
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
6XIQ|1|2|G|1188
6XIQ|1|2|A|1189
6XIQ|1|2|C|1190
6XIQ|1|2|U|1191
6XIQ|1|2|C|1192
6XIQ|1|2|A|1193
6XIQ|1|2|A|1194
6XIQ|1|2|C|1195
6XIQ|1|2|A|1196
6XIQ|1|2|C|1197
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AK
- RPS20 isoform 1
- Chain AT
- RPS29A isoform 1
- Chain AX
- Transfer RNA; tRNA
- Chain AZ
- Transfer RNA; tRNA
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