HL_6XIQ_113
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCACAUUGC
- Length
- 9 nucleotides
- Bulged bases
- 6XIQ|1|4|A|109, 6XIQ|1|4|C|110, 6XIQ|1|4|A|111, 6XIQ|1|4|U|112, 6XIQ|1|4|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_113 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.2912
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
6XIQ|1|4|G|107
6XIQ|1|4|C|108
6XIQ|1|4|A|109
6XIQ|1|4|C|110
6XIQ|1|4|A|111
6XIQ|1|4|U|112
6XIQ|1|4|U|113
6XIQ|1|4|G|114
6XIQ|1|4|C|115
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: