HL_6XIQ_115

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6XIQ|1|AX|U|17, 6XIQ|1|AX|G|19, 6XIQ|1|AX|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_115 not in the Motif Atlas

Homologous match to HL_2AKE_001

Geometric discrepancy: 0.564

The information below is about HL_2AKE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27981.1

Basepair signature

cWW-cWS

Number of instances in this motif group

2

Unit IDs

6XIQ|1|AX|C|13
6XIQ|1|AX|A|14
6XIQ|1|AX|G|15
6XIQ|1|AX|U|16
6XIQ|1|AX|U|17
6XIQ|1|AX|G|18
6XIQ|1|AX|G|19
6XIQ|1|AX|G|20
6XIQ|1|AX|A|21
6XIQ|1|AX|G|22

Current chains

Chain AX

Transfer RNA

Nearby chains

Chain L1

RPL1A isoform 1