HL_6XIQ_117

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_117 not in the Motif Atlas

Homologous match to HL_4RDX_003

Geometric discrepancy: 0.439

The information below is about HL_4RDX_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6XIQ|1|AX|G|53
6XIQ|1|AX|U|54
6XIQ|1|AX|U|55
6XIQ|1|AX|C|56
6XIQ|1|AX|G|57
6XIQ|1|AX|A|58
6XIQ|1|AX|U|59
6XIQ|1|AX|C|60
6XIQ|1|AX|C|61

Current chains

Chain AX

Transfer RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain L1

RPL1A isoform 1