HL_6XIQ_122

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases

6XIQ|1|1|U|689, 6XIQ|1|1|A|690, 6XIQ|1|1|A|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|686
6XIQ|1|1|U|687
6XIQ|1|1|G|688
6XIQ|1|1|U|689
6XIQ|1|1|A|690
6XIQ|1|1|A|691
6XIQ|1|1|A|692
6XIQ|1|1|A|693
6XIQ|1|1|C|694

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain C

RPL4A isoform 1

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain Y

60S ribosomal protein L26-A