HL_6XIR_005

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6XIR|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1089

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6XIR|1|1|U|194
6XIR|1|1|U|195
6XIR|1|1|G|196
6XIR|1|1|G|197
6XIR|1|1|A|198
6XIR|1|1|A|199
6XIR|1|1|C|200
6XIR|1|1|A|201

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain Y

60S ribosomal protein L26-A

Chain e

RPL32 isoform 1