6XIR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XIR_001 | 1/1/38:45 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_6XIR_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6XIR_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6XIR_004 | 1/1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6XIR_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6XIR_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6XIR_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6XIR_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6XIR_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6XIR_010 | 1/1/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_6XIR_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6XIR_013 | 1/1/544:547 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIR_014 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6XIR_015 | 1/1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6XIR_120 | 1/1/687:693 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6XIR_017 | 1/1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6XIR_018 | 1/1/732:737 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6XIR_019 | 1/1/758:773 | No text annotation | ||
| HL_6XIR_020 | 1/1/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6XIR_021 | 1/1/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6XIR_022 | 1/1/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6XIR_023 | 1/1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6XIR_024 | 1/1/1023:1029 | No text annotation | ||
| HL_6XIR_025 | 1/1/1076:1083 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6XIR_026 | 1/1/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6XIR_027 | 1/1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_6XIR_029 | 1/1/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_6XIR_030 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6XIR_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6XIR_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6XIR_033 | 1/1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6XIR_034 | 1/1/1565:1574 | No text annotation | ||
| HL_6XIR_035 | 1/1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6XIR_036 | 1/1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6XIR_037 | 1/1/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6XIR_038 | 1/1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6XIR_128 | 1/1/1760:1765 | No text annotation | ||
| HL_6XIR_040 | 1/1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6XIR_041 | 1/1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6XIR_042 | 1/1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6XIR_043 | 1/1/1923:1928 | UNCG | geometric HL_5Y85_004 HL_34617.5 | |
| HL_6XIR_045 | 1/1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6XIR_046 | 1/1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6XIR_047 | 1/1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6XIR_048 | 1/1/2219:2226 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_6XIR_049 | 1/1/2253:2263 | No text annotation | ||
| HL_6XIR_050 | 1/1/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6XIR_051 | 1/1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6XIR_129 | 1/1/2534:2545 | No text annotation | ||
| HL_6XIR_054 | 1/1/2568:2574 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6XIR_055 | 1/1/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6XIR_056 | 1/1/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6XIR_057 | 1/1/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6XIR_058 | 1/1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6XIR_059 | 1/1/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6XIR_060 | 1/1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6XIR_061 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6XIR_062 | 1/1/2840:2848 | GNRA | geometric HL_5LM7_001 HL_37824.7 | |
| HL_6XIR_063 | 1/1/2897:2904 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6XIR_122 | 1/1/2918:2928 | No text annotation | ||
| HL_6XIR_064 | 1/1/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6XIR_065 | 1/1/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6XIR_066 | 1/1/3025:3030 | GNRA | homologous HL_8C3A_066 NA | |
| HL_6XIR_067 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6XIR_068 | 1/1/3111:3123 | No text annotation | ||
| HL_6XIR_069 | 1/1/3194:3197 | No text annotation | homologous HL_5TBW_068 NA | |
| HL_6XIR_070 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6XIR_071 | 1/1/3303:3311 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6XIR_072 | 1/1/3350:3353 | No text annotation | ||
| HL_6XIR_073 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6XIR_074 | 1/2/64:86 | No text annotation | ||
| HL_6XIR_075 | 1/2/149:165 | No text annotation | ||
| HL_6XIR_076 | 1/2/190:196 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIR_077 | 1/2/230:235 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6XIR_078 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_8P9A_195 HL_77436.5 | |
| HL_6XIR_079 | 1/2/276:279 | Mini UNCG | homologous HL_8C3A_198 NA | |
| HL_6XIR_080 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_6XIR_081 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6XIR_082 | 1/2/393:404 | No text annotation | ||
| HL_6XIR_083 | 1/2/411:423 | No text annotation | ||
| HL_6XIR_084 | 1/2/450:456 | No text annotation | ||
| HL_6XIR_085 | 1/2/491:496 | No text annotation | ||
| HL_6XIR_123 | 1/2/516:536 | No text annotation | ||
| HL_6XIR_086 | 1/2/520:532 | No text annotation | ||
| HL_6XIR_087 | 1/2/569:574 | No text annotation | ||
| HL_6XIR_090 | 1/2/777:783 | No text annotation | ||
| HL_6XIR_091 | 1/2/827:845 | No text annotation | ||
| HL_6XIR_092 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6XIR_093 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_6XIR_094 | 1/2/997:1007 | No text annotation | ||
| HL_6XIR_096 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_6XIR_097 | 1/2/1121:1126 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6XIR_098 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6XIR_100 | 1/2/1296:1301 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6XIR_101 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6XIR_102 | 1/2/1358:1365 | No text annotation | ||
| HL_6XIR_103 | 1/2/1395:1404 | No text annotation | ||
| HL_6XIR_104 | 1/2/1501:1506 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6XIR_105 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6XIR_106 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6XIR_107 | 1/2/1697:1703 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6XIR_125 | 1/2/1778:1784 | No text annotation | ||
| HL_6XIR_126 | 1/3/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6XIR_109 | 1/3/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6XIR_110 | 1/3/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6XIR_127 | 1/4/47:56 | Pseudoknot with intercalation | geometric HL_8C3A_229 NA | |
| HL_6XIR_111 | 1/4/69:89 | No text annotation | ||
| HL_6XIR_112 | 1/4/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6XIR_113 | 1/4/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6XIR_114 | 1/AX/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_6XIR_115 | 1/AX/31:39 | No text annotation | homologous HL_6PMO_004 NA | |
| HL_6XIR_116 | 1/AX/53:61 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6XIR_117 | 1/AZ/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_6XIR_118 | 1/AZ/31:39 | No text annotation | homologous HL_6PMO_004 NA | |
| HL_6XIR_119 | 1/AZ/53:61 | No text annotation | geometric HL_8C3A_039 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XIR_012 | Externally structured | ||
| HL_6XIR_016 | No text annotation | ||
| HL_6XIR_028 | No text annotation | ||
| HL_6XIR_039 | No text annotation | ||
| HL_6XIR_044 | No text annotation | ||
| HL_6XIR_052 | No text annotation | ||
| HL_6XIR_121 | No text annotation | ||
| HL_6XIR_053 | No text annotation | ||
| HL_6XIR_088 | No text annotation | ||
| HL_6XIR_089 | No text annotation | ||
| HL_6XIR_124 | No text annotation | ||
| HL_6XIR_095 | No text annotation | ||
| HL_6XIR_099 | No text annotation | ||
| HL_6XIR_108 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XIR_002 | 1/1/7:8, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6XIR_003 | 1/1/13:15, 1/4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6XIR_004 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6XIR_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_6XIR_006 | 1/1/82:89, 1/1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6XIR_007 | 1/1/116:123, 1/1/149:153 | No text annotation | ||
| IL_6XIR_008 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_6XIR_009 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6XIR_010 | 1/1/160:162, 1/1/260:261 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6XIR_011 | 1/1/162:163, 1/1/258:260 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_6XIR_219 | 1/1/164:167, 1/1/254:257 | Tandem non-canonical cWW pairs | geometric IL_8C3A_109 NA | |
| IL_6XIR_013 | 1/1/167:171, 1/1/247:254 | No text annotation | ||
| IL_6XIR_014 | 1/1/177:178, 1/1/238:241 | No text annotation | ||
| IL_6XIR_015 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_6XIR_016 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6XIR_017 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6XIR_018 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_6XIR_019 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6XIR_020 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6XIR_021 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6XIR_022 | 1/1/531:540, 1/1/551:561 | No text annotation | ||
| IL_6XIR_220 | 1/1/531:543, 1/1/548:561 | No text annotation | ||
| IL_6XIR_023 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_6XIR_024 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6XIR_025 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_6XIR_026 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6XIR_027 | 1/1/755:756, 1/1/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_6XIR_028 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6XIR_029 | 1/1/805:809, 1/1/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6XIR_030 | 1/1/828:829, 1/1/895:897 | Single bulged A | geometric IL_7A0S_016 IL_31462.6 | |
| IL_6XIR_031 | 1/1/833:834, 1/1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6XIR_032 | 1/1/834:838, 1/1/855:859 | Triple sheared | geometric IL_4WF9_024 IL_50730.2 | |
| IL_6XIR_033 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6XIR_034 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6XIR_035 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_6XIR_036 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6XIR_037 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6XIR_038 | 1/1/977:981, 1/1/1102:1104 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_6XIR_039 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6XIR_040 | 1/1/991:997, 1/1/1052:1058 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_6XIR_041 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_6XIR_042 | 1/1/999:1004, 1/1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6XIR_043 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_6XIR_044 | 1/1/1009:1011, 1/1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6XIR_045 | 1/1/1013:1015, 1/1/1036:1037 | No text annotation | ||
| IL_6XIR_222 | 1/1/1013:1020, 1/1/1032:1037 | No text annotation | ||
| IL_6XIR_046 | 1/1/1015:1020, 1/1/1032:1036 | No text annotation | ||
| IL_6XIR_047 | 1/1/1069:1071, 1/1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6XIR_048 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_6XIR_049 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6XIR_050 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6XIR_051 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_6XIR_052 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_6XIR_053 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6XIR_054 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6XIR_055 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6XIR_056 | 1/1/1217:1226, 1/1/1283:1288 | No text annotation | ||
| IL_6XIR_057 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6XIR_058 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6XIR_059 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6XIR_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6XIR_061 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6XIR_062 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | geometric IL_4V9F_051 IL_63596.11 | |
| IL_6XIR_063 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6XIR_243 | 1/1/1618:1620, 1/1/1825:1826 | Single stack bend | geometric IL_7MLX_001 IL_90729.1 | |
| IL_6XIR_065 | 1/1/1623:1624, 1/1/1819:1822 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.4 | |
| IL_6XIR_244 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | ||
| IL_6XIR_067 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6XIR_068 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6XIR_069 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_6XIR_070 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_6XIR_071 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6XIR_072 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_6XIR_073 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6XIR_074 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6XIR_075 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6XIR_076 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6XIR_223 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6XIR_077 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6XIR_078 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6XIR_079 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6XIR_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_73355.1 | |
| IL_6XIR_081 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6XIR_082 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_6XIR_083 | 1/1/2196:2199, 1/1/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6XIR_084 | 1/1/2200:2201, 1/1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6XIR_085 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U | homologous IL_8P9A_314 IL_89505.4 | |
| IL_6XIR_245 | 1/1/2206:2209, 1/1/2236:2237 | No text annotation | ||
| IL_6XIR_087 | 1/1/2210:2217, 1/1/2228:2235 | No text annotation | ||
| IL_6XIR_088 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6XIR_089 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6XIR_090 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6XIR_091 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6XIR_092 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6XIR_093 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6XIR_094 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6XIR_095 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6XIR_096 | 1/1/2532:2534, 1/1/2546:2547 | No text annotation | ||
| IL_6XIR_097 | 1/1/2565:2568, 1/1/2574:2576 | No text annotation | ||
| IL_6XIR_098 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6XIR_099 | 1/1/2666:2668, 1/1/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6XIR_100 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6XIR_101 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_6XIR_102 | 1/1/2823:2826, 1/1/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6XIR_103 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_6XIR_104 | 1/1/2828:2831, 1/1/2857:2862 | No text annotation | ||
| IL_6XIR_105 | 1/1/2835:2839, 1/1/2849:2853 | No text annotation | ||
| IL_6XIR_106 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6XIR_107 | 1/1/2879:2881, 1/1/2943:2947 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6XIR_108 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6XIR_109 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_6XIR_224 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_6XIR_110 | 1/1/2891:2892, 1/1/2909:2912 | Major groove platform with intercalation | geometric IL_5J7L_342 IL_02555.1 | |
| IL_6XIR_111 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6XIR_112 | 1/1/2960:2961, 1/1/2970:2972 | No text annotation | ||
| IL_6XIR_113 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6XIR_114 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6XIR_115 | 1/1/3019:3025, 1/1/3030:3035 | No text annotation | ||
| IL_6XIR_116 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_6XIR_117 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6XIR_118 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6XIR_119 | 1/1/3103:3107, 1/1/3127:3131 | No text annotation | ||
| IL_6XIR_120 | 1/1/3164:3166, 1/1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_6XIR_121 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_6XIR_122 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_6XIR_123 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6XIR_124 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_6XIR_125 | 1/1/3227:3230, 1/1/3257:3258 | Multiple bulged bases | geometric IL_5TBW_119 NA | |
| IL_6XIR_225 | 1/1/3227:3235, 1/1/3252:3258 | No text annotation | ||
| IL_6XIR_126 | 1/1/3231:3235, 1/1/3252:3256 | No text annotation | ||
| IL_6XIR_127 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_6XIR_128 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_5TBW_129 NA | |
| IL_6XIR_129 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | geometric IL_4V9F_029 IL_89505.4 | |
| IL_6XIR_130 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6XIR_131 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6XIR_132 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6XIR_133 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_6XIR_134 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6XIR_135 | 1/1/3349:3350, 1/1/3353:3356 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.4 | |
| IL_6XIR_246 | 1/2/23:27, 1/2/599:602 | No text annotation | ||
| IL_6XIR_137 | 1/2/42:48, 1/2/431:433 | No text annotation | ||
| IL_6XIR_138 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6XIR_139 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6XIR_140 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_6XIR_141 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6XIR_142 | 1/2/117:123, 1/2/294:299 | No text annotation | ||
| IL_6XIR_143 | 1/2/143:149, 1/2/165:172 | No text annotation | ||
| IL_6XIR_144 | 1/2/184:186, 1/2/199:201 | No text annotation | ||
| IL_6XIR_145 | 1/2/186:190, 1/2/196:199 | No text annotation | ||
| IL_6XIR_146 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_51387.2 | |
| IL_6XIR_147 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_6XIR_227 | 1/2/270:273, 1/2/283:285 | No text annotation | ||
| IL_6XIR_149 | 1/2/275:276, 1/2/279:281 | No text annotation | ||
| IL_6XIR_150 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6XIR_151 | 1/2/318:323, 1/2/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6XIR_152 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6XIR_153 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6XIR_154 | 1/2/439:441, 1/2/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_6XIR_155 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_6XIR_156 | 1/2/447:448, 1/2/458:460 | Single bulged G | homologous IL_8C3A_417 NA | |
| IL_6XIR_157 | 1/2/481:485, 1/2/502:507 | No text annotation | ||
| IL_6XIR_158 | 1/2/487:490, 1/2/498:500 | No text annotation | ||
| IL_6XIR_159 | 1/2/490:491, 1/2/496:498 | No text annotation | ||
| IL_6XIR_160 | 1/2/514:516, 1/2/536:543 | No text annotation | ||
| IL_6XIR_161 | 1/2/516:518, 1/2/533:536 | No text annotation | ||
| IL_6XIR_162 | 1/2/518:520, 1/2/532:533 | No text annotation | ||
| IL_6XIR_163 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6XIR_164 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6XIR_165 | 1/2/562:568, 1/2/575:583 | No text annotation | ||
| IL_6XIR_166 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6XIR_167 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6XIR_168 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6XIR_247 | 1/2/746:747, 1/2/802:805 | No text annotation | homologous IL_8P9A_412 IL_68140.4 | |
| IL_6XIR_170 | 1/2/747:751, 1/2/798:802 | No text annotation | ||
| IL_6XIR_231 | 1/2/751:776, 1/2/784:798 | No text annotation | ||
| IL_6XIR_171 | 1/2/822:824, 1/2/849:850 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6XIR_172 | 1/2/824:827, 1/2/845:849 | No text annotation | ||
| IL_6XIR_173 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6XIR_232 | 1/2/868:870, 1/2/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_6XIR_233 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_6XIR_176 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6XIR_177 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6XIR_178 | 1/2/893:899, 1/2/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6XIR_179 | 1/2/985:990, 1/2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_6XIR_180 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6XIR_181 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6XIR_182 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6XIR_183 | 1/2/1051:1053, 1/2/1066:1067 | No text annotation | ||
| IL_6XIR_184 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6XIR_185 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6XIR_186 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6XIR_187 | 1/2/1157:1161, 1/2/1616:1621 | No text annotation | ||
| IL_6XIR_248 | 1/2/1173:1176, 1/2/1463:1466 | No text annotation | ||
| IL_6XIR_189 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6XIR_190 | 1/2/1268:1270, 1/2/1440:1441 | No text annotation | ||
| IL_6XIR_249 | 1/2/1271:1278, 1/2/1430:1439 | No text annotation | ||
| IL_6XIR_192 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6XIR_193 | 1/2/1288:1292, 1/2/1323:1327 | No text annotation | ||
| IL_6XIR_194 | 1/2/1339:1344, 1/2/1381:1385 | No text annotation | ||
| IL_6XIR_195 | 1/2/1345:1349, 1/2/1376:1380 | No text annotation | ||
| IL_6XIR_196 | 1/2/1349:1352, 1/2/1374:1376 | No text annotation | ||
| IL_6XIR_197 | 1/2/1352:1355, 1/2/1367:1374 | No text annotation | ||
| IL_6XIR_198 | 1/2/1355:1358, 1/2/1365:1367 | No text annotation | ||
| IL_6XIR_199 | 1/2/1393:1395, 1/2/1404:1405 | No text annotation | ||
| IL_6XIR_235 | 1/2/1478:1487, 1/2/1519:1529 | No text annotation | ||
| IL_6XIR_200 | 1/2/1488:1498, 1/2/1509:1518 | No text annotation | ||
| IL_6XIR_201 | 1/2/1541:1545, 1/2/1566:1571 | No text annotation | ||
| IL_6XIR_202 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6XIR_250 | 1/2/1636:1641, 1/2/1760:1767 | No text annotation | ||
| IL_6XIR_203 | 1/2/1638:1642, 1/2/1759:1764 | No text annotation | ||
| IL_6XIR_204 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6XIR_238 | 1/2/1644:1653, 1/2/1748:1757 | No text annotation | ||
| IL_6XIR_251 | 1/2/1653:1659, 1/2/1742:1748 | No text annotation | ||
| IL_6XIR_252 | 1/2/1659:1667, 1/2/1734:1742 | No text annotation | ||
| IL_6XIR_205 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6XIR_206 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_6XIR_207 | 1/2/1675:1678, 1/2/1723:1726 | Double sheared | geometric IL_3DIL_002 IL_09705.15 | |
| IL_6XIR_208 | 1/2/1678:1685, 1/2/1716:1723 | No text annotation | ||
| IL_6XIR_241 | 1/2/1686:1697, 1/2/1703:1715 | No text annotation | ||
| IL_6XIR_242 | 1/2/1776:1778, 1/2/1784:1785 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6XIR_209 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6XIR_210 | 1/3/21:27, 1/3/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6XIR_211 | 1/3/28:29, 1/3/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_6XIR_212 | 1/3/29:30, 1/3/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6XIR_213 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_6XIR_214 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6XIR_215 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6XIR_216 | 1/4/43:64, 1/4/96:101 | No text annotation | ||
| IL_6XIR_217 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_6XIR_218 | 1/4/68:69, 1/4/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XIR_001 | No text annotation | ||
| IL_6XIR_012 | No text annotation | ||
| IL_6XIR_221 | No text annotation | ||
| IL_6XIR_064 | No text annotation | ||
| IL_6XIR_066 | No text annotation | ||
| IL_6XIR_086 | No text annotation | ||
| IL_6XIR_226 | Isolated cWH basepair | ||
| IL_6XIR_136 | No text annotation | ||
| IL_6XIR_148 | No text annotation | ||
| IL_6XIR_228 | No text annotation | ||
| IL_6XIR_229 | No text annotation | ||
| IL_6XIR_230 | Isolated non-canonical cWW pair | ||
| IL_6XIR_169 | No text annotation | ||
| IL_6XIR_174 | Tandem non-canonical cWW pairs | ||
| IL_6XIR_175 | Tandem non-canonical cWW pairs | ||
| IL_6XIR_188 | No text annotation | ||
| IL_6XIR_191 | No text annotation | ||
| IL_6XIR_234 | No text annotation | ||
| IL_6XIR_236 | No text annotation | ||
| IL_6XIR_237 | No text annotation | ||
| IL_6XIR_239 | No text annotation | ||
| IL_6XIR_240 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XIR_001 | 1/1/113:116, 1/1/153:158, 1/1/263:267 | No text annotation | ||
| J3_6XIR_029 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_6XIR_030 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_6XIR_031 | 1/1/185:189, 1/1/205:214, 1/1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_6XIR_032 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6XIR_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6XIR_033 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6XIR_003 | 1/1/436:443, 1/1/492:495, 1/1/618:623 | No text annotation | ||
| J3_6XIR_004 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6XIR_005 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6XIR_006 | 1/1/829:831, 1/1/863:867, 1/1/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6XIR_007 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_6XIR_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_6XIR_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6XIR_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6XIR_034 | 1/1/1537:1542, 1/1/1551:1560, 1/1/1579:1584 | No text annotation | ||
| J3_6XIR_011 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6XIR_035 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6XIR_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_6XIR_013 | 1/1/2529:2532, 1/1/2547:2564, 1/1/2577:2581 | No text annotation | ||
| J3_6XIR_036 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6XIR_014 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6XIR_015 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6XIR_037 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_6XIR_016 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6XIR_017 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | ||
| J3_6XIR_038 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_6XIR_018 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6XIR_039 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_6XIR_019 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6XIR_020 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_6XIR_021 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | ||
| J3_6XIR_022 | 1/2/1168:1172, 1/2/1467:1470, 1/2/1574:1577 | No text annotation | ||
| J3_6XIR_023 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6XIR_040 | 1/2/1212:1220, 1/2/1263:1268, 1/2/1441:1451 | No text annotation | ||
| J3_6XIR_024 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | ||
| J3_6XIR_025 | 1/2/1293:1294, 1/2/1303:1308, 1/2/1317:1322 | No text annotation | ||
| J3_6XIR_026 | 1/2/1334:1338, 1/2/1386:1391, 1/2/1407:1417 | No text annotation | ||
| J3_6XIR_027 | 1/2/1470:1474, 1/2/1533:1541, 1/2/1571:1574 | No text annotation | ||
| J3_6XIR_028 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6XIR_042 | 1/4/43:45, 1/4/58:64, 1/4/96:101 | No text annotation | ||
| J4_6XIR_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6XIR_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_6XIR_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_6XIR_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_6XIR_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_6XIR_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6XIR_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_6XIR_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_6XIR_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_6XIR_010 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_6XIR_011 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_6XIR_012 | 1/AX/7:10, 1/AX/25:27, 1/AX/43:49, 1/AX/65:66 | No text annotation | ||
| J4_6XIR_013 | 1/AZ/7:10, 1/AZ/25:27, 1/AZ/43:49, 1/AZ/65:66 | No text annotation | ||
| J5_6XIR_001 | 1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6XIR_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6XIR_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_6XIR_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_6XIR_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation | ||
| J5_6XIR_006 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_6XIR_007 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/423:426 | No text annotation | ||
| J5_6XIR_008 | 1/2/123:143, 1/2/172:184, 1/2/201:204, 1/2/263:267, 1/2/288:294 | No text annotation | ||
| J5_6XIR_010 | 1/2/636:642, 1/2/692:700, 1/2/738:744, 1/2/807:822, 1/2/850:860 | No text annotation | ||
| J6_6XIR_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_6XIR_002 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804 | No text annotation | ||
| J6_6XIR_003 | 1/2/31:42, 1/2/433:439, 1/2/464:479, 1/2/509:514, 1/2/543:547, 1/2/591:595 | No text annotation | ||
| J6_6XIR_004 | 1/2/31:48, 1/2/431:439, 1/2/464:479, 1/2/509:514, 1/2/543:547, 1/2/591:595 | No text annotation | ||
| J7_6XIR_001 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XIR_041 | No text annotation | ||
| J5_6XIR_009 | No text annotation |
Coloring options: