HL_6XIR_018

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

6XIR|1|1|C|734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_018 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.3339

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6XIR|1|1|C|732
6XIR|1|1|G|733
6XIR|1|1|C|734
6XIR|1|1|A|735
6XIR|1|1|A|736
6XIR|1|1|G|737

Current chains

Chain 1

35S ribosomal RNA

Nearby chains