HL_6XIR_029
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6XIR|1|1|U|1351, 6XIR|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIR_029 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3046
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
6XIR|1|1|U|1347
6XIR|1|1|U|1348
6XIR|1|1|G|1349
6XIR|1|1|A|1350
6XIR|1|1|U|1351
6XIR|1|1|A|1352
6XIR|1|1|U|1353
6XIR|1|1|G|1354
6XIR|1|1|A|1355
6XIR|1|1|U|1356
6XIR|1|1|G|1357
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- RPL32 isoform 1
Coloring options: