HL_6XIR_030

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_030 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0729

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6XIR|1|1|C|1403
6XIR|1|1|G|1404
6XIR|1|1|U|1405
6XIR|1|1|A|1406
6XIR|1|1|A|1407
6XIR|1|1|G|1408

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain e

RPL32 isoform 1