HL_6XIR_035
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6XIR|1|1|U|1606, 6XIR|1|1|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIR_035 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.1176
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6XIR|1|1|G|1599
6XIR|1|1|U|1600
6XIR|1|1|U|1601
6XIR|1|1|A|1602
6XIR|1|1|A|1603
6XIR|1|1|G|1604
6XIR|1|1|A|1605
6XIR|1|1|U|1606
6XIR|1|1|U|1607
6XIR|1|1|C|1608
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
Coloring options: