HL_6XIR_044

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGGGUACGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|G|1948
6XIR|1|1|G|1949
6XIR|1|1|U|1950
6XIR|1|1|C|1951
6XIR|1|1|G|1952
6XIR|1|1|G|1953
6XIR|1|1|G|1954
6XIR|1|1|U|1955
6XIR|1|1|A|2093
6XIR|1|1|C|2094
6XIR|1|1|G|2095
6XIR|1|1|A|2096
6XIR|1|1|U|2097
6XIR|1|1|C|2098

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A