HL_6XIR_049

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6XIR|1|1|C|2257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|G|2253
6XIR|1|1|U|2254
6XIR|1|1|A|2255
6XIR|1|1|A|2256
6XIR|1|1|C|2257
6XIR|1|1|U|2258
6XIR|1|1|A|2259
6XIR|1|1|U|2260
6XIR|1|1|G|2261
6XIR|1|1|A|2262
6XIR|1|1|C|2263

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AZ

Transfer RNA; tRNA