HL_6XIR_051

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6XIR|1|1|A|2372, 6XIR|1|1|A|2373, 6XIR|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1066

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6XIR|1|1|G|2369
6XIR|1|1|G|2370
6XIR|1|1|G|2371
6XIR|1|1|A|2372
6XIR|1|1|A|2373
6XIR|1|1|C|2374
6XIR|1|1|G|2375
6XIR|1|1|G|2376
6XIR|1|1|G|2377
6XIR|1|1|C|2378

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain e

RPL32 isoform 1