HL_6XIR_054

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUCGG

Length

7 nucleotides

Bulged bases

6XIR|1|1|U|2571, 6XIR|1|1|C|2572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_054 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2367

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6XIR|1|1|C|2568
6XIR|1|1|A|2569
6XIR|1|1|U|2570
6XIR|1|1|U|2571
6XIR|1|1|C|2572
6XIR|1|1|G|2573
6XIR|1|1|G|2574

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain G

RPL8A isoform 1

Chain Z

60S ribosomal protein L27-A