HL_6XIR_057

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2352

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6XIR|1|1|A|2673
6XIR|1|1|A|2674
6XIR|1|1|C|2675
6XIR|1|1|A|2676
6XIR|1|1|G|2677
6XIR|1|1|A|2678
6XIR|1|1|A|2679
6XIR|1|1|A|2680
6XIR|1|1|U|2681

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain AZ

Transfer RNA; tRNA

Chain J

RPL11B isoform 1