HL_6XIR_060

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_060 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0902

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6XIR|1|1|U|2744
6XIR|1|1|G|2745
6XIR|1|1|A|2746
6XIR|1|1|A|2747
6XIR|1|1|A|2748
6XIR|1|1|G|2749

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain D

RPL5 isoform 1

Chain T

60S ribosomal protein L21-A