HL_6XIR_062

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6XIR|1|1|A|2845, 6XIR|1|1|U|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_062 not in the Motif Atlas

Geometric match to HL_5LM7_001

Geometric discrepancy: 0.3888

The information below is about HL_5LM7_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6XIR|1|1|C|2840
6XIR|1|1|G|2841
6XIR|1|1|U|2842
6XIR|1|1|U|2843
6XIR|1|1|C|2844
6XIR|1|1|A|2845
6XIR|1|1|U|2846
6XIR|1|1|A|2847
6XIR|1|1|G|2848

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain I

RPL10 isoform 1