HL_6XIR_063

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6XIR|1|1|G|2898, 6XIR|1|1|A|2900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_063 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.1309

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6XIR|1|1|A|2897
6XIR|1|1|G|2898
6XIR|1|1|C|2899
6XIR|1|1|A|2900
6XIR|1|1|G|2901
6XIR|1|1|A|2902
6XIR|1|1|A|2903
6XIR|1|1|U|2904

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain H

RPL9A isoform 1