HL_6XIR_064

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_064 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.2209

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XIR|1|1|U|2920
6XIR|1|1|U|2921
6XIR|1|1|G|2922
6XIR|1|1|U|2923
6XIR|1|1|U|2924
6XIR|1|1|C|2925
6XIR|1|1|A|2926

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1