HL_6XIR_068

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAACGCCUCUAA

Length

13 nucleotides

Bulged bases

6XIR|1|1|G|3116, 6XIR|1|1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|1|U|3111
6XIR|1|1|G|3112
6XIR|1|1|A|3113
6XIR|1|1|A|3114
6XIR|1|1|C|3115
6XIR|1|1|G|3116
6XIR|1|1|C|3117
6XIR|1|1|C|3118
6XIR|1|1|U|3119
6XIR|1|1|C|3120
6XIR|1|1|U|3121
6XIR|1|1|A|3122
6XIR|1|1|A|3123

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain H

RPL9A isoform 1

Chain O

60S ribosomal protein L16-A