HL_6XIR_069

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

6XIR|1|1|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_069 not in the Motif Atlas

Homologous match to HL_5TBW_068

Geometric discrepancy: 0.2067

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6XIR|1|1|C|3194
6XIR|1|1|U|3195
6XIR|1|1|U|3196
6XIR|1|1|G|3197

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain H

RPL9A isoform 1

Chain M

60S ribosomal protein L14-A