HL_6XIR_071

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6XIR|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1223

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6XIR|1|1|G|3303
6XIR|1|1|U|3304
6XIR|1|1|A|3305
6XIR|1|1|U|3306
6XIR|1|1|A|3307
6XIR|1|1|C|3308
6XIR|1|1|G|3309
6XIR|1|1|A|3310
6XIR|1|1|C|3311

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain P

60S ribosomal protein L17-A