HL_6XIR_083

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUCCAAGGAAGG

Length

13 nucleotides

Bulged bases

6XIR|1|2|A|412, 6XIR|1|2|U|413, 6XIR|1|2|A|417

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|C|411
6XIR|1|2|A|412
6XIR|1|2|U|413
6XIR|1|2|C|414
6XIR|1|2|C|415
6XIR|1|2|A|416
6XIR|1|2|A|417
6XIR|1|2|G|418
6XIR|1|2|G|419
6XIR|1|2|A|420
6XIR|1|2|A|421
6XIR|1|2|G|422
6XIR|1|2|G|423

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L23-A

Chain w

40S ribosomal protein S6-A