HL_6XIR_091

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

6XIR|1|2|G|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|C|827
6XIR|1|2|U|828
6XIR|1|2|A|829
6XIR|1|2|U|830
6XIR|1|2|U|831
6XIR|1|2|U|832
6XIR|1|2|U|833
6XIR|1|2|G|834
6XIR|1|2|U|835
6XIR|1|2|U|836
6XIR|1|2|G|837
6XIR|1|2|G|838
6XIR|1|2|U|839
6XIR|1|2|U|840
6XIR|1|2|U|841
6XIR|1|2|C|842
6XIR|1|2|U|843
6XIR|1|2|A|844
6XIR|1|2|G|845

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A