HL_6XIR_095

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUGA

Length

7 nucleotides

Bulged bases

6XIR|1|2|A|1062

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_095 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3226

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6XIR|1|2|U|1054
6XIR|1|2|U|1055
6XIR|1|2|U|1056
6XIR|1|2|A|1062
6XIR|1|2|U|1063
6XIR|1|2|G|1064
6XIR|1|2|A|1065

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain AR

40S ribosomal protein S27-A

Chain r

RPS1A isoform 1