HL_6XIR_102

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAUUUGC

Length

8 nucleotides

Bulged bases

6XIR|1|2|A|1360, 6XIR|1|2|U|1361, 6XIR|1|2|U|1362, 6XIR|1|2|U|1363, 6XIR|1|2|G|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|G|1358
6XIR|1|2|C|1359
6XIR|1|2|A|1360
6XIR|1|2|U|1361
6XIR|1|2|U|1362
6XIR|1|2|U|1363
6XIR|1|2|G|1364
6XIR|1|2|C|1365

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A