HL_6XIR_104

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIR_104 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1668

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6XIR|1|2|C|1501
6XIR|1|2|G|1502
6XIR|1|2|A|1503
6XIR|1|2|G|1504
6XIR|1|2|A|1505
6XIR|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

RPS15 isoform 1

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A