HL_6XIR_121
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGAAUUCAUUUUCCA
- Length
- 16 nucleotides
- Bulged bases
- 6XIR|1|1|A|2535, 6XIR|1|1|C|2539, 6XIR|1|1|U|2544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|1|U|2532
6XIR|1|1|G|2533
6XIR|1|1|G|2534
6XIR|1|1|A|2535
6XIR|1|1|A|2536
6XIR|1|1|U|2537
6XIR|1|1|U|2538
6XIR|1|1|C|2539
6XIR|1|1|A|2540
6XIR|1|1|U|2541
6XIR|1|1|U|2542
6XIR|1|1|U|2543
6XIR|1|1|U|2544
6XIR|1|1|C|2545
6XIR|1|1|C|2546
6XIR|1|1|A|2547
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain G
- RPL8A isoform 1
- Chain g
- 60S ribosomal protein L34-A
- Chain r
- RPS1A isoform 1
Coloring options: