HL_6XJQ_001
3D structure
- PDB id
- 6XJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.708 Å
Loop
- Sequence
- CUUGCCCGUUAUCG
- Length
- 14 nucleotides
- Bulged bases (A, C, G, U)
- 24U, 31U, 32U, 33A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40442.1
- Basepair signature
- cWW-tSW-cWW-cWS-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6XJQ|1|A|C|23
6XJQ|1|A|U|24
6XJQ|1|A|U|25
6XJQ|1|A|G|26
6XJQ|1|A|C|27
6XJQ|1|A|C|28
6XJQ|1|A|C|29
6XJQ|1|A|G|30
6XJQ|1|A|U|31
6XJQ|1|A|U|32
6XJQ|1|A|A|33
6XJQ|1|A|U|34
6XJQ|1|A|C|35
6XJQ|1|A|G|36
Current chains
- Chain A
- Self-alkylating ribozyme (58-MER)
Nearby chains
- Chain B
- Self-alkylating ribozyme (58-MER)
- Chain C
- Fab HAVx Heavy Chain
- Chain D
- Fab HAVx Light Chain
- Chain H
- Fab HAVx Heavy Chain
- Chain L
- Fab HAVx Light Chain
Coloring options: