3D structure

PDB id
6XJQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate
Experimental method
X-RAY DIFFRACTION
Resolution
1.708 Å

Loop

Sequence
CUUGCCCGUUAUCG
Length
14 nucleotides
Bulged bases (A, C, G, U)
24U, 31U, 32U, 33A
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40442.1
Basepair signature
cWW-tSW-cWW-cWS-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6XJQ|1|A|C|23
6XJQ|1|A|U|24
6XJQ|1|A|U|25
6XJQ|1|A|G|26
6XJQ|1|A|C|27
6XJQ|1|A|C|28
6XJQ|1|A|C|29
6XJQ|1|A|G|30
6XJQ|1|A|U|31
6XJQ|1|A|U|32
6XJQ|1|A|A|33
6XJQ|1|A|U|34
6XJQ|1|A|C|35
6XJQ|1|A|G|36

Current chains

Chain A
Self-alkylating ribozyme (58-MER)

Nearby chains

Chain B
Self-alkylating ribozyme (58-MER)
Chain C
Fab HAVx Heavy Chain
Chain D
Fab HAVx Light Chain
Chain H
Fab HAVx Heavy Chain
Chain L
Fab HAVx Light Chain

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.3459 s