HL_6XQD_031

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

6XQD|1|1A|U|1175, 6XQD|1|1A|G|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQD_031 not in the Motif Atlas

Homologous match to HL_7RQB_031

Geometric discrepancy: 0.3956

The information below is about HL_7RQB_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94651.3

Basepair signature

cWW-tSS

Number of instances in this motif group

6

Unit IDs

6XQD|1|1A|G|1171
6XQD|1|1A|G|1173
6XQD|1|1A|A|1174
6XQD|1|1A|U|1175
6XQD|1|1A|G|1176
6XQD|1|1A|A|1177
6XQD|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains