HL_6XQD_161

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6XQD|1|2A|A|2268, 6XQD|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQD_161 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0649

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6XQD|1|2A|C|2264
6XQD|1|2A|U|2265
6XQD|1|2A|A|2266
6XQD|1|2A|A|2267
6XQD|1|2A|A|2268
6XQD|1|2A|A|2269
6XQD|1|2A|G|2270
6XQD|1|2A|G|2271
6XQD|1|2A|U|2272
6XQD|1|2A|A|2273
6XQD|1|2A|A|2274
6XQD|1|2A|C|2275
6XQD|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16