HL_6XQD_183

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

6XQD|1|2a|U|202, 6XQD|1|2a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQD_183 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.3076

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6XQD|1|2a|G|200
6XQD|1|2a|C|201
6XQD|1|2a|U|202
6XQD|1|2a|U|203
6XQD|1|2a|U|204
6XQD|1|2a|G|216
6XQD|1|2a|C|217

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains