HL_6XQD_225
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUUCGGG
- Length
- 8 nucleotides
- Bulged bases
- 6XQD|1|2a|U|421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XQD_225 not in the Motif Atlas
- Geometric match to HL_5TBW_021
- Geometric discrepancy: 0.3123
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6XQD|1|2a|C|418
6XQD|1|2a|C|419
6XQD|1|2a|U|420
6XQD|1|2a|U|421
6XQD|1|2a|C|422
6XQD|1|2a|G|423
6XQD|1|2a|G|424
6XQD|1|2a|G|425
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2d
- 30S ribosomal protein S4
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